PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold000010002020.1 Alkaloid GS low borderline
Csinscaffold000020009090.1 Alkaloid GS medium pass
Csinscaffold000020011760.1 Alkaloid GS low borderline
Csinscaffold000020011760.2 Alkaloid GS low borderline
Csinscaffold000020011760.3 Alkaloid GS low borderline
Csinscaffold000020011760.4 Alkaloid GS low borderline
Csinscaffold000020011760.5 Alkaloid GS low borderline
Csinscaffold000020011760.6 Alkaloid GS low borderline
Csinscaffold000020011760.7 Alkaloid GS low borderline
Csinscaffold000020011760.8 Alkaloid GS low borderline
Csinscaffold000020011760.9 Alkaloid GS low borderline
Csinscaffold000020014720.1 Alkaloid GS high pass
Csinscaffold000030018910.1 Alkaloid GS low borderline
Csinscaffold000030018910.2 Alkaloid GS low borderline
Csinscaffold000030018910.5 Alkaloid GS low borderline
Csinscaffold000090046860.1 Alkaloid GS high pass
Csinscaffold000090046860.2 Alkaloid GS high pass
Csinscaffold000100049410.1 Alkaloid GS low borderline
Csinscaffold000100049410.2 Alkaloid GS low borderline
Csinscaffold000100049410.3 Alkaloid GS low borderline
Csinscaffold000100049410.4 Alkaloid GS low borderline
Csinscaffold000140059260.1 Alkaloid GS low borderline
Csinscaffold000140059260.2 Alkaloid GS low borderline
Csinscaffold000140059260.3 Alkaloid GS low borderline
Csinscaffold000240081530.1 Alkaloid GS low borderline
Csinscaffold000240081530.2 Alkaloid GS low borderline
Csinscaffold000280087610.1 Alkaloid GS low borderline
Csinscaffold000280087610.2 Alkaloid GS low borderline
Csinscaffold000280087610.3 Alkaloid GS low borderline
Csinscaffold000290089780.1 Alkaloid GS low borderline
Csinscaffold000290089790.1 Alkaloid GS low borderline
Csinscaffold000590115540.1 Alkaloid GS high pass
Csinscaffold000590115540.2 Alkaloid GS high pass
Csinscaffold000590115540.3 Alkaloid GS high pass
Csinscaffold000590115540.4 Alkaloid GS high pass
Csinscaffold000620118690.1 Alkaloid GS medium pass
Csinscaffold000620118700.1 Alkaloid GS medium pass
Csinscaffold000620118700.2 Alkaloid GS medium pass
Csinscaffold000620118700.3 Alkaloid GS medium pass
Csinscaffold000620118700.4 Alkaloid GS medium pass
Csinscaffold000620118700.5 Alkaloid GS medium pass
Csinscaffold000620118710.1 Alkaloid GS medium pass
Csinscaffold000620118710.2 Alkaloid GS medium pass
Csinscaffold000620118710.3 Alkaloid GS medium pass
Csinscaffold000620118710.4 Alkaloid GS medium pass
Csinscaffold000650120570.1 Alkaloid GS high pass
Csinscaffold000760126770.1 Alkaloid GS low borderline
Csinscaffold000760126770.2 Alkaloid GS low borderline
Csinscaffold000760126770.3 Alkaloid GS low borderline
Csinscaffold001430151700.1 Alkaloid GS high pass