PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold002240168170.1 Alkaloid COR medium pass
Csinscaffold002800177460.1 Alkaloid COR medium pass
Csinscaffold002800177480.1 Alkaloid COR medium pass
Csinscaffold002800177490.1 Alkaloid COR medium pass
Csinscaffold002800177500.1 Alkaloid COR medium pass
Csinscaffold002800177500.2 Alkaloid COR medium pass
Csinscaffold003090181440.1 Alkaloid COR medium pass
Csinscaffold003090181440.2 Alkaloid COR medium pass
Csinscaffold003250183180.1 Alkaloid COR medium pass
Csinscaffold004450196290.1 Alkaloid COR medium pass
Csinscaffold005780204120.1 Alkaloid COR medium pass
Csinscaffold005780204140.1 Alkaloid COR medium pass
Csinscaffold006230206110.1 Alkaloid COR medium pass
Csinscaffold010700217270.1 Alkaloid COR low borderline
Csinscaffold015480222480.1 Alkaloid COR medium pass
Csinscaffold075680243580.1 Alkaloid COR medium pass
Csinscaffold089420246640.1 Alkaloid COR medium pass
Csinscaffold000050030750.1 Alkaloid CYP719 medium borderline
Csinscaffold000100048230.1 Alkaloid CYP719 medium borderline
Csinscaffold000170066810.1 Alkaloid CYP719 medium borderline
Csinscaffold001230146390.1 Alkaloid CYP719 medium borderline
Csinscaffold001260147220.1 Alkaloid CYP719 low borderline
Csinscaffold004380195660.1 Alkaloid CYP719 medium borderline
Csinscaffold004380195660.2 Alkaloid CYP719 medium borderline
Csinscaffold004380195660.3 Alkaloid CYP719 low borderline
Csinscaffold005850204280.1 Alkaloid CYP719 medium borderline
Csinscaffold005850204300.1 Alkaloid CYP719 medium borderline
Csinscaffold000010003210.1 Alkaloid CYP80B1 medium borderline
Csinscaffold002880178810.1 Alkaloid CYP80B1 low borderline
Csinscaffold003460186070.1 Alkaloid CYP80B1 medium borderline
Csinscaffold009070214260.1 Alkaloid CYP80B1 medium borderline
Csinscaffold009450214860.1 Alkaloid CYP80B1 medium borderline
Csinscaffold092780247340.1 Alkaloid CYP80B1 medium borderline
Csinscaffold109310250770.1 Alkaloid CYP80B1 medium borderline
Csinscaffold000020009570.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000020011220.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000040024410.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000090044110.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000130057250.1 Alkaloid G8O/G8H low borderline
Csinscaffold000150061110.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000200073270.1 Alkaloid G8O/G8H low borderline
Csinscaffold000320092880.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000330094440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000400100260.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000430103400.1 Alkaloid G8O/G8H low borderline
Csinscaffold000480106920.1 Alkaloid G8O/G8H medium pass
Csinscaffold000630119100.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119390.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119400.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000630119410.1 Alkaloid G8O/G8H medium borderline