PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold000770126970.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000910133750.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000920134050.1 Alkaloid G8O/G8H low borderline
Csinscaffold000930134550.1 Alkaloid G8O/G8H low borderline
Csinscaffold001220146100.1 Alkaloid G8O/G8H medium borderline
Csinscaffold001340149510.1 Alkaloid G8O/G8H medium borderline
Csinscaffold002090165980.1 Alkaloid G8O/G8H medium borderline
Csinscaffold002710176420.1 Alkaloid G8O/G8H medium borderline
Csinscaffold004040192580.2 Alkaloid G8O/G8H low borderline
Csinscaffold004130193430.1 Alkaloid G8O/G8H medium borderline
Csinscaffold004130193440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005100200440.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005380202000.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005850204290.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005850204310.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005940204810.1 Alkaloid G8O/G8H medium borderline
Csinscaffold005940204830.1 Alkaloid G8O/G8H medium borderline
Csinscaffold006130205760.1 Alkaloid G8O/G8H medium borderline
Csinscaffold006300206500.4 Alkaloid G8O/G8H low borderline
Csinscaffold006980209000.1 Alkaloid G8O/G8H medium borderline
Csinscaffold009750215410.1 Alkaloid G8O/G8H medium borderline
Csinscaffold011250217970.1 Alkaloid G8O/G8H low borderline
Csinscaffold013570220670.1 Alkaloid G8O/G8H medium borderline
Csinscaffold013910221080.1 Alkaloid G8O/G8H medium borderline
Csinscaffold014300221490.1 Alkaloid G8O/G8H medium pass
Csinscaffold019480225370.1 Alkaloid G8O/G8H medium borderline
Csinscaffold023250227550.1 Alkaloid G8O/G8H medium borderline
Csinscaffold024770228430.1 Alkaloid G8O/G8H medium borderline
Csinscaffold029780230830.1 Alkaloid G8O/G8H low borderline
Csinscaffold031590231450.1 Alkaloid G8O/G8H low borderline
Csinscaffold037820233940.1 Alkaloid G8O/G8H medium borderline
Csinscaffold045600236160.1 Alkaloid G8O/G8H medium pass
Csinscaffold045600236160.2 Alkaloid G8O/G8H medium pass
Csinscaffold046670236370.1 Alkaloid G8O/G8H medium borderline
Csinscaffold048600237010.1 Alkaloid G8O/G8H medium borderline
Csinscaffold054850238640.1 Alkaloid G8O/G8H medium borderline
Csinscaffold058970239600.1 Alkaloid G8O/G8H medium borderline
Csinscaffold066210241330.1 Alkaloid G8O/G8H low borderline
Csinscaffold076810243830.1 Alkaloid G8O/G8H medium borderline
Csinscaffold077380243940.1 Alkaloid G8O/G8H medium borderline
Csinscaffold078620244140.1 Alkaloid G8O/G8H low borderline
Csinscaffold079340244320.1 Alkaloid G8O/G8H medium borderline
Csinscaffold103540249520.1 Alkaloid G8O/G8H medium borderline
Csinscaffold114090251750.1 Alkaloid G8O/G8H medium borderline
Csinscaffold124270253490.1 Alkaloid G8O/G8H medium borderline
Csinscaffold000020009910.1 Alkaloid GES medium pass
Csinscaffold000020009920.1 Alkaloid GES medium pass
Csinscaffold000040027060.1 Alkaloid GES medium pass
Csinscaffold000070038110.1 Alkaloid GES medium pass
Csinscaffold000070038110.2 Alkaloid GES medium pass