PlantSME Plant secondary metabolism enzyme database

Dianthus caryophyllus (dianthus_caryophyllus)

Imported from atlas release summary for Dianthus caryophyllus.

1667
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 483 20 BAHD (183) View species results
Phenylpropanoid pathway 402 12 POD (198) View species results
Alkaloid pathway 339 20 7DLGT (65) View species results
Flavonoid pathway 215 12 UFGT (138) View species results
Rosmarinic acid pathway 134 7 C4H (46) View species results
Steroid pathway 94 11 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 329 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
genome_Dca53748.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
genome_Dca54988.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca54990.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca54991.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca55610.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
genome_Dca56437.1 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
genome_Dca56438.1 Phenylpropanoid CAD low borderline CAD__00010__sp_P48523_CADH4_ARATH
genome_Dca56439.1 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
genome_Dca56520.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
genome_Dca57776.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca57857.1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
genome_Dca59456.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca59457.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
genome_Dca60590.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
genome_Dca60618.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE