PlantSME Plant secondary metabolism enzyme database

Dianthus caryophyllus (dianthus_caryophyllus)

Imported from atlas release summary for Dianthus caryophyllus.

1667
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.97% Phenylpropanoid pathway 24.12% Alkaloid pathway 20.34% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.04% Steroid pathway 5.64%
Family Distribution
BAHD 5.94% C3'H/CYP98A 5.65% C4H 5.38% POD 5.26% UGT 3.96% UFGT 3.69% 4CL 3.69% CYP76 3.6%
Other Families 62.82%
More Families (96)
7DLGT 147 3.55% F3H 146 3.52% IFS 133 3.21% T3O 118 2.85% NMT 102 2.46% DWF4/CYP90B1 95 2.29% CODM/T6ODM 91 2.2% F3'H/CYP75B 85 2.05% BR6OX2/CYP85A2 77 1.86% STR 70 1.69% H6H 66 1.59% CAD 65 1.57% SMT1/SMT2/SMT3 64 1.55% TRI/TRII 56 1.35% CAS 51 1.23% CYP71 46 1.11% TPS 45 1.09% COMT 44 1.06% RAS 44 1.06% SGD 42 1.01% HCT 39 0.94% CSE 38 0.92% T16H 37 0.89% GES 36 0.87% IFR 36 0.87% LAC 34 0.82% ANR 33 0.8% CYP90D1 33 0.8% GS 32 0.77% SLS 31 0.75% PMT 29 0.7% 16OMT 28 0.68% G8O/G8H 28 0.68% PYKS 28 0.68% 7DLH 27 0.65% 8HGO 25 0.6% CCR 23 0.56% CYP51G1 23 0.56% ROT3/CYP90C1 23 0.56% F3'5'H/CYP75A 22 0.53% FNS 21 0.51% COR 19 0.46% PAL 18 0.43% BBE 17 0.41% IO 16 0.39% LAMT 16 0.39% TAT 15 0.36% ANS/LDOX 14 0.34% F5H/CYP84A 14 0.34% BR6OX1/CYP85A1 14 0.34% CPD/CYP90A1 14 0.34% NCS 13 0.31% SQS/FDFT1 13 0.31% DFR 12 0.29% FPPS 11 0.27% HPPR 10 0.24% DXR 10 0.24% CHS 9 0.22% DET2 9 0.22% CPR 8 0.19% SMO1/SMO2 8 0.19% GGPPS 8 0.19% CYP80B1 7 0.17% MPO 7 0.17% TYDC_DDC 7 0.17% DWF7 7 0.17% AACT 7 0.17% DWF1 6 0.14% SQE 6 0.14% DXS 6 0.14% CNMT 5 0.12% CCoAOMT 5 0.12% CYP719 4 0.1% ISY 4 0.1% CHI 4 0.1% HYD1 4 0.1% HMGR 4 0.1% HMGS 4 0.1% ADC 3 0.07% MCT/IspD 3 0.07% MVK 3 0.07% MVD 3 0.07% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% FLS 2 0.05% CMK/IspE 2 0.05% GPPS 2 0.05% IDI 2 0.05% PMK 2 0.05% HDS/IspG 2 0.05% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% FK 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 483 20 BAHD (183) View species results
Phenylpropanoid pathway 402 12 POD (198) View species results
Alkaloid pathway 339 20 7DLGT (65) View species results
Flavonoid pathway 215 12 UFGT (138) View species results
Rosmarinic acid pathway 134 7 C4H (46) View species results
Steroid pathway 94 11 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 329 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
genome_Dca15944.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca18937.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca2328.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca26206.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca28056.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca28578.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca29489.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
genome_Dca32916.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca50436.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca53377.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca55724.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca55728.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
genome_Dca59452.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA