Dianthus caryophyllus (dianthus_caryophyllus)
Imported from atlas release summary for Dianthus caryophyllus.
1667
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1667
Family-Level Assignments
BAHD
5.94%
C3'H/CYP98A
5.65%
C4H
5.38%
POD
5.26%
UGT
3.96%
UFGT
3.69%
4CL
3.69%
CYP76
3.6%
Other Families
62.82%
More Families (96)
7DLGT
147
3.55%
F3H
146
3.52%
IFS
133
3.21%
T3O
118
2.85%
NMT
102
2.46%
DWF4/CYP90B1
95
2.29%
CODM/T6ODM
91
2.2%
F3'H/CYP75B
85
2.05%
BR6OX2/CYP85A2
77
1.86%
STR
70
1.69%
H6H
66
1.59%
CAD
65
1.57%
SMT1/SMT2/SMT3
64
1.55%
TRI/TRII
56
1.35%
CAS
51
1.23%
CYP71
46
1.11%
TPS
45
1.09%
COMT
44
1.06%
RAS
44
1.06%
SGD
42
1.01%
HCT
39
0.94%
CSE
38
0.92%
T16H
37
0.89%
GES
36
0.87%
IFR
36
0.87%
LAC
34
0.82%
ANR
33
0.8%
CYP90D1
33
0.8%
GS
32
0.77%
SLS
31
0.75%
PMT
29
0.7%
16OMT
28
0.68%
G8O/G8H
28
0.68%
PYKS
28
0.68%
7DLH
27
0.65%
8HGO
25
0.6%
CCR
23
0.56%
CYP51G1
23
0.56%
ROT3/CYP90C1
23
0.56%
F3'5'H/CYP75A
22
0.53%
FNS
21
0.51%
COR
19
0.46%
PAL
18
0.43%
BBE
17
0.41%
IO
16
0.39%
LAMT
16
0.39%
TAT
15
0.36%
ANS/LDOX
14
0.34%
F5H/CYP84A
14
0.34%
BR6OX1/CYP85A1
14
0.34%
CPD/CYP90A1
14
0.34%
NCS
13
0.31%
SQS/FDFT1
13
0.31%
DFR
12
0.29%
FPPS
11
0.27%
HPPR
10
0.24%
DXR
10
0.24%
CHS
9
0.22%
DET2
9
0.22%
CPR
8
0.19%
SMO1/SMO2
8
0.19%
GGPPS
8
0.19%
CYP80B1
7
0.17%
MPO
7
0.17%
TYDC_DDC
7
0.17%
DWF7
7
0.17%
AACT
7
0.17%
DWF1
6
0.14%
SQE
6
0.14%
DXS
6
0.14%
CNMT
5
0.12%
CCoAOMT
5
0.12%
CYP719
4
0.1%
ISY
4
0.1%
CHI
4
0.1%
HYD1
4
0.1%
HMGR
4
0.1%
HMGS
4
0.1%
ADC
3
0.07%
MCT/IspD
3
0.07%
MVK
3
0.07%
MVD
3
0.07%
XMT_MXMT_DXMT
2
0.05%
TDC
2
0.05%
FLS
2
0.05%
CMK/IspE
2
0.05%
GPPS
2
0.05%
IDI
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Family-Level Assignments | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 483 | 20 | BAHD (183) | View species results |
| Phenylpropanoid pathway | 402 | 12 | POD (198) | View species results |
| Alkaloid pathway | 339 | 20 | 7DLGT (65) | View species results |
| Flavonoid pathway | 215 | 12 | UFGT (138) | View species results |
| Rosmarinic acid pathway | 134 | 7 | C4H (46) | View species results |
| Steroid pathway | 94 | 11 | SMT1/SMT2/SMT3 (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Family-level assignments | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 329 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| genome_Dca10319.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca10320.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca13107.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca157.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| genome_Dca15737.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca158.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| genome_Dca159.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| genome_Dca160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| genome_Dca16058.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca161.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| genome_Dca17330.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca17669.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| genome_Dca1925.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| genome_Dca19259.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| genome_Dca19260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca19261.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca19262.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca19263.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca19264.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca19553.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| genome_Dca22092.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| genome_Dca25818.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca292.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| genome_Dca30601.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| genome_Dca33157.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| genome_Dca3393.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca3394.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca35663.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| genome_Dca38315.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| genome_Dca40358.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| genome_Dca41736.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca4177.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca4210.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca44632.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| genome_Dca45339.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca4968.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| genome_Dca50252.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca50380.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| genome_Dca53488.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca55340.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca55560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca55652.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| genome_Dca55812.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| genome_Dca56167.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca56795.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| genome_Dca56942.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca56943.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca56944.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| genome_Dca58183.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| genome_Dca59965.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |