PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

4696
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
GtomD02G0004380.1 Flavonoid C4H medium borderline
GtomD04G0023390.1 Flavonoid C4H medium borderline
GtomD04G0023400.1 Flavonoid C4H medium borderline
GtomD10G0022410.1 Flavonoid C4H medium borderline
GtomD10G0025020.1 Flavonoid C4H medium borderline
GtomD12G0010720.1 Flavonoid C4H medium borderline
GtomD13G0004160.1 Flavonoid C4H medium borderline
GtomD13G0007400.1 Flavonoid C4H medium borderline
GtomD13G0007400.2 Flavonoid C4H medium borderline
GtomD13G0010150.1 Flavonoid C4H medium borderline
GtomD13G0010180.1 Flavonoid C4H medium borderline
GtomD13G0010610.1 Flavonoid C4H low borderline
GtomD13G0028680.1 Flavonoid C4H medium borderline
Gtomscaffold_2600001220.1 Flavonoid C4H medium borderline
Gtomscaffold_2600001230.1 Flavonoid C4H medium borderline
Gtomscaffold_2600001240.1 Flavonoid C4H medium borderline
Gtomscaffold_2600001240.2 Flavonoid C4H medium borderline
GtomA01G0005180.1 Rosmarinic Acid C4H low borderline
GtomA01G0005190.1 Rosmarinic Acid C4H low borderline
GtomA01G0005200.1 Rosmarinic Acid C4H low borderline
GtomA01G0005210.1 Rosmarinic Acid C4H low borderline
GtomA01G0007830.1 Rosmarinic Acid C4H medium pass
GtomA01G0007840.1 Rosmarinic Acid C4H low borderline
GtomA01G0009450.1 Rosmarinic Acid C4H low borderline
GtomA01G0010420.1 Rosmarinic Acid C4H low borderline
GtomA01G0010440.1 Rosmarinic Acid C4H medium pass
GtomA01G0010470.1 Rosmarinic Acid C4H low borderline
GtomA01G0010490.1 Rosmarinic Acid C4H low borderline
GtomA01G0010510.1 Rosmarinic Acid C4H low borderline
GtomA01G0010520.1 Rosmarinic Acid C4H low borderline
GtomA01G0010530.1 Rosmarinic Acid C4H low borderline
GtomA01G0010540.1 Rosmarinic Acid C4H medium pass
GtomA01G0010560.1 Rosmarinic Acid C4H low borderline
GtomA01G0011180.1 Rosmarinic Acid C4H low borderline
GtomA01G0013830.1 Rosmarinic Acid C4H low borderline
GtomA01G0013950.1 Rosmarinic Acid C4H low borderline
GtomA01G0019380.1 Rosmarinic Acid C4H low borderline
GtomA01G0023120.1 Rosmarinic Acid C4H medium pass
GtomA01G0023130.1 Rosmarinic Acid C4H medium pass
GtomA01G0023140.1 Rosmarinic Acid C4H medium pass
GtomA01G0023370.1 Rosmarinic Acid C4H medium pass
GtomA01G0024490.1 Rosmarinic Acid C4H low borderline
GtomA02G0000530.1 Rosmarinic Acid C4H medium pass
GtomA02G0002500.1 Rosmarinic Acid C4H low borderline
GtomA02G0002780.1 Rosmarinic Acid C4H low borderline
GtomA02G0002790.1 Rosmarinic Acid C4H low borderline
GtomA02G0002800.1 Rosmarinic Acid C4H low borderline
GtomA02G0002810.1 Rosmarinic Acid C4H low borderline
GtomA02G0002830.1 Rosmarinic Acid C4H low borderline
GtomA02G0002830.2 Rosmarinic Acid C4H low borderline