PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
GtomA12G0027350.1 Rosmarinic Acid C4H low borderline
GtomA12G0029200.1 Rosmarinic Acid C4H low borderline
GtomA12G0030020.1 Rosmarinic Acid C4H low borderline
GtomA12G0030030.1 Rosmarinic Acid C4H low borderline
GtomA12G0030050.1 Rosmarinic Acid C4H medium pass
GtomA12G0030060.1 Rosmarinic Acid C4H low borderline
GtomA13G0000110.1 Rosmarinic Acid C4H medium pass
GtomA13G0001420.1 Rosmarinic Acid C4H low borderline
GtomA13G0001940.1 Rosmarinic Acid C4H low borderline
GtomA13G0002530.1 Rosmarinic Acid C4H medium pass
GtomA13G0002560.1 Rosmarinic Acid C4H medium pass
GtomA13G0002580.1 Rosmarinic Acid C4H medium pass
GtomA13G0003370.1 Rosmarinic Acid C4H medium pass
GtomA13G0004290.1 Rosmarinic Acid C4H low borderline
GtomA13G0004310.1 Rosmarinic Acid C4H low borderline
GtomA13G0004330.1 Rosmarinic Acid C4H low borderline
GtomA13G0006690.1 Rosmarinic Acid C4H low borderline
GtomA13G0006750.1 Rosmarinic Acid C4H low borderline
GtomA13G0009180.1 Rosmarinic Acid C4H low borderline
GtomA13G0009210.1 Rosmarinic Acid C4H low borderline
GtomA13G0009380.1 Rosmarinic Acid C4H low borderline
GtomA13G0009870.1 Rosmarinic Acid C4H low borderline
GtomA13G0011910.1 Rosmarinic Acid C4H low borderline
GtomA13G0014580.1 Rosmarinic Acid C4H low borderline
GtomA13G0014840.1 Rosmarinic Acid C4H low borderline
GtomA13G0014900.1 Rosmarinic Acid C4H low borderline
GtomA13G0016090.1 Rosmarinic Acid C4H low borderline
GtomA13G0016210.1 Rosmarinic Acid C4H low borderline
GtomA13G0016210.2 Rosmarinic Acid C4H low borderline
GtomA13G0018600.1 Rosmarinic Acid C4H low borderline
GtomA13G0018680.1 Rosmarinic Acid C4H low borderline
GtomA13G0018690.1 Rosmarinic Acid C4H low borderline
GtomA13G0023890.1 Rosmarinic Acid C4H medium pass
GtomA13G0027940.1 Rosmarinic Acid C4H medium pass
GtomD01G0004530.1 Rosmarinic Acid C4H low borderline
GtomD01G0004550.1 Rosmarinic Acid C4H low borderline
GtomD01G0004560.1 Rosmarinic Acid C4H low borderline
GtomD01G0004570.1 Rosmarinic Acid C4H low borderline
GtomD01G0004570.2 Rosmarinic Acid C4H low borderline
GtomD01G0007040.1 Rosmarinic Acid C4H medium pass
GtomD01G0007050.1 Rosmarinic Acid C4H medium pass
GtomD01G0007060.1 Rosmarinic Acid C4H medium pass
GtomD01G0008750.1 Rosmarinic Acid C4H low borderline
GtomD01G0009710.1 Rosmarinic Acid C4H low borderline
GtomD01G0009720.1 Rosmarinic Acid C4H low borderline
GtomD01G0009730.1 Rosmarinic Acid C4H low borderline
GtomD01G0009750.1 Rosmarinic Acid C4H medium pass
GtomD01G0009760.1 Rosmarinic Acid C4H low borderline
GtomD01G0009760.2 Rosmarinic Acid C4H low borderline
GtomD01G0009780.1 Rosmarinic Acid C4H low borderline