PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

4696
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.62% Alkaloid pathway 23.45% Phenylpropanoid pathway 21.32% Flavonoid pathway 10.9% Rosmarinic acid pathway 8.18% Steroid pathway 6.54%
Family Distribution
C4H 6.86% BAHD 6.73% C3'H/CYP98A 5.56% 4CL 3.95% IFS 3.78% POD 3.64% CYP76 3.53% F3H 3.42%
Other Families 62.53%
More Families (98)
T3O 400 3.4% UGT 355 3.02% NMT 352 2.99% 7DLGT 340 2.89% UFGT 340 2.89% STR 238 2.02% DWF4/CYP90B1 224 1.9% BR6OX2/CYP85A2 221 1.88% CODM/T6ODM 206 1.75% F3'H/CYP75B 199 1.69% H6H 177 1.5% CAS 174 1.48% CAD 169 1.44% CYP71 163 1.39% LAC 151 1.28% SMT1/SMT2/SMT3 144 1.22% CYP90D1 144 1.22% TRI/TRII 139 1.18% 7DLH 136 1.16% TPS 119 1.01% HCT 117 0.99% GES 114 0.97% RAS 112 0.95% CSE 110 0.94% GS 105 0.89% COMT 92 0.78% IFR 87 0.74% BBE 85 0.72% PYKS 78 0.66% T16H 77 0.65% SGD 72 0.61% NCS 70 0.6% IO 70 0.6% COR 70 0.6% 16OMT 69 0.59% ANR 69 0.59% CCR 69 0.59% ROT3/CYP90C1 66 0.56% PMT 64 0.54% G8O/G8H 63 0.54% TAT 62 0.53% BR6OX1/CYP85A1 62 0.53% F5H/CYP84A 60 0.51% F3'5'H/CYP75A 59 0.5% SLS 57 0.48% CPD/CYP90A1 57 0.48% FNS 53 0.45% PAL 51 0.43% SQS/FDFT1 44 0.37% CNMT 43 0.37% CYP51G1 43 0.37% 8HGO 41 0.35% DFR 36 0.31% GGPPS 36 0.31% SQE 32 0.27% MVD 32 0.27% LAMT 30 0.26% CCoAOMT 30 0.26% CPR 30 0.26% ANS/LDOX 29 0.25% MPO 25 0.21% CHS 24 0.2% SMO1/SMO2 23 0.2% FPPS 23 0.2% AACT 22 0.19% TYDC_DDC 20 0.17% HMGR 17 0.14% MVK 17 0.14% ISY 16 0.14% CYP719 16 0.14% HPPR 16 0.14% MCT/IspD 16 0.14% DXR 16 0.14% ADC 15 0.13% DXS 15 0.13% CYP80B1 13 0.11% CHI 13 0.11% HMGS 13 0.11% TDC 10 0.09% DET2 9 0.08% MDS/IspF 9 0.08% CYP80F1 8 0.07% FLS 8 0.07% DWF5 7 0.06% HDR/IspH 6 0.05% ODC 5 0.04% CPI1 5 0.04% DWF7 5 0.04% 6OMT_4OMT_SOMT 4 0.03% XMT_MXMT_DXMT 3 0.03% HYD1 3 0.03% HDS/IspG 3 0.03% FK 2 0.02% DWF1 2 0.02% GPPS 2 0.02% CMK/IspE 2 0.02% IDI 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
Reset
Gene Pathway Family Confidence Status
GtomD10G0024020.1 Alkaloid PMT low borderline
GtomD10G0031760.1 Alkaloid PMT low borderline
GtomD11G0011840.1 Alkaloid PMT medium pass
GtomD11G0026810.1 Alkaloid PMT medium pass
GtomD11G0026830.1 Alkaloid PMT low borderline
GtomD12G0029440.1 Alkaloid PMT medium borderline
GtomD12G0029440.2 Alkaloid PMT medium borderline
GtomD12G0029440.3 Alkaloid PMT medium borderline
GtomD13G0013270.1 Alkaloid PMT medium pass
GtomD13G0013280.1 Alkaloid PMT medium pass
GtomD13G0013290.1 Alkaloid PMT medium pass
GtomD13G0013300.1 Alkaloid PMT medium pass
GtomD13G0019950.1 Alkaloid PMT medium pass
Gtomscaffold_3520001730.1 Alkaloid PMT medium pass