Gossypium tomentosum (gossypium_tomentosum)
Imported from atlas release summary for Gossypium tomentosum.
4696
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4696
Candidate Genes
C4H
6.86%
BAHD
6.73%
C3'H/CYP98A
5.56%
4CL
3.95%
IFS
3.78%
POD
3.64%
CYP76
3.53%
F3H
3.42%
Other Families
62.53%
More Families (98)
T3O
400
3.4%
UGT
355
3.02%
NMT
352
2.99%
7DLGT
340
2.89%
UFGT
340
2.89%
STR
238
2.02%
DWF4/CYP90B1
224
1.9%
BR6OX2/CYP85A2
221
1.88%
CODM/T6ODM
206
1.75%
F3'H/CYP75B
199
1.69%
H6H
177
1.5%
CAS
174
1.48%
CAD
169
1.44%
CYP71
163
1.39%
LAC
151
1.28%
SMT1/SMT2/SMT3
144
1.22%
CYP90D1
144
1.22%
TRI/TRII
139
1.18%
7DLH
136
1.16%
TPS
119
1.01%
HCT
117
0.99%
GES
114
0.97%
RAS
112
0.95%
CSE
110
0.94%
GS
105
0.89%
COMT
92
0.78%
IFR
87
0.74%
BBE
85
0.72%
PYKS
78
0.66%
T16H
77
0.65%
SGD
72
0.61%
NCS
70
0.6%
IO
70
0.6%
COR
70
0.6%
16OMT
69
0.59%
ANR
69
0.59%
CCR
69
0.59%
ROT3/CYP90C1
66
0.56%
PMT
64
0.54%
G8O/G8H
63
0.54%
TAT
62
0.53%
BR6OX1/CYP85A1
62
0.53%
F5H/CYP84A
60
0.51%
F3'5'H/CYP75A
59
0.5%
SLS
57
0.48%
CPD/CYP90A1
57
0.48%
FNS
53
0.45%
PAL
51
0.43%
SQS/FDFT1
44
0.37%
CNMT
43
0.37%
CYP51G1
43
0.37%
8HGO
41
0.35%
DFR
36
0.31%
GGPPS
36
0.31%
SQE
32
0.27%
MVD
32
0.27%
LAMT
30
0.26%
CCoAOMT
30
0.26%
CPR
30
0.26%
ANS/LDOX
29
0.25%
MPO
25
0.21%
CHS
24
0.2%
SMO1/SMO2
23
0.2%
FPPS
23
0.2%
AACT
22
0.19%
TYDC_DDC
20
0.17%
HMGR
17
0.14%
MVK
17
0.14%
ISY
16
0.14%
CYP719
16
0.14%
HPPR
16
0.14%
MCT/IspD
16
0.14%
DXR
16
0.14%
ADC
15
0.13%
DXS
15
0.13%
CYP80B1
13
0.11%
CHI
13
0.11%
HMGS
13
0.11%
TDC
10
0.09%
DET2
9
0.08%
MDS/IspF
9
0.08%
CYP80F1
8
0.07%
FLS
8
0.07%
DWF5
7
0.06%
HDR/IspH
6
0.05%
ODC
5
0.04%
CPI1
5
0.04%
DWF7
5
0.04%
6OMT_4OMT_SOMT
4
0.03%
XMT_MXMT_DXMT
3
0.03%
HYD1
3
0.03%
HDS/IspG
3
0.03%
FK
2
0.02%
DWF1
2
0.02%
GPPS
2
0.02%
CMK/IspE
2
0.02%
IDI
2
0.02%
PMK
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1391 | 21 | BAHD (633) | View species results |
| Alkaloid pathway | 1101 | 26 | NMT (205) | View species results |
| Phenylpropanoid pathway | 1001 | 12 | POD (408) | View species results |
| Flavonoid pathway | 512 | 12 | UFGT (312) | View species results |
| Rosmarinic acid pathway | 384 | 7 | C4H (133) | View species results |
| Steroid pathway | 307 | 13 | CAS (153) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4458 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1021 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GtomA05G0044420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA06G0007160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0000260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0005820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0006750.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| GtomA07G0006760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA07G0007040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0012040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0012050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0012070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0013280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA07G0015180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA07G0015220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA08G0003260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA08G0010260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA08G0013580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA08G0017650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0000240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0009600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA09G0012210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA09G0013270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0013590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0014000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0015750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0016350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA09G0023690.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA09G0023730.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| GtomA09G0024260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA10G0007510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0007560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0007560.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0008940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0008940.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0021050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0021050.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0021060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA10G0024480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011720.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011720.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011720.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0011720.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0023000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0023010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0023010.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0023640.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0025270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomA11G0033440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomA11G0033450.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |