Gossypium tomentosum (gossypium_tomentosum)
Imported from atlas release summary for Gossypium tomentosum.
5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
11761
Family-Level Calls
C4H
6.86%
BAHD
6.73%
C3'H/CYP98A
5.56%
4CL
3.95%
IFS
3.78%
POD
3.64%
CYP76
3.53%
F3H
3.42%
Other Families
62.53%
More Families (98)
T3O
400
3.4%
UGT
355
3.02%
NMT
352
2.99%
7DLGT
340
2.89%
UFGT
340
2.89%
STR
238
2.02%
DWF4/CYP90B1
224
1.9%
BR6OX2/CYP85A2
221
1.88%
CODM/T6ODM
206
1.75%
F3'H/CYP75B
199
1.69%
H6H
177
1.5%
CAS
174
1.48%
CAD
169
1.44%
CYP71
163
1.39%
LAC
151
1.28%
SMT1/SMT2/SMT3
144
1.22%
CYP90D1
144
1.22%
TRI/TRII
139
1.18%
7DLH
136
1.16%
TPS
119
1.01%
HCT
117
0.99%
GES
114
0.97%
RAS
112
0.95%
CSE
110
0.94%
GS
105
0.89%
COMT
92
0.78%
IFR
87
0.74%
BBE
85
0.72%
PYKS
78
0.66%
T16H
77
0.65%
SGD
72
0.61%
NCS
70
0.6%
IO
70
0.6%
COR
70
0.6%
16OMT
69
0.59%
ANR
69
0.59%
CCR
69
0.59%
ROT3/CYP90C1
66
0.56%
PMT
64
0.54%
G8O/G8H
63
0.54%
TAT
62
0.53%
BR6OX1/CYP85A1
62
0.53%
F5H/CYP84A
60
0.51%
F3'5'H/CYP75A
59
0.5%
SLS
57
0.48%
CPD/CYP90A1
57
0.48%
FNS
53
0.45%
PAL
51
0.43%
SQS/FDFT1
44
0.37%
CNMT
43
0.37%
CYP51G1
43
0.37%
8HGO
41
0.35%
DFR
36
0.31%
GGPPS
36
0.31%
SQE
32
0.27%
MVD
32
0.27%
LAMT
30
0.26%
CCoAOMT
30
0.26%
CPR
30
0.26%
ANS/LDOX
29
0.25%
MPO
25
0.21%
CHS
24
0.2%
SMO1/SMO2
23
0.2%
FPPS
23
0.2%
AACT
22
0.19%
TYDC_DDC
20
0.17%
HMGR
17
0.14%
MVK
17
0.14%
ISY
16
0.14%
CYP719
16
0.14%
HPPR
16
0.14%
MCT/IspD
16
0.14%
DXR
16
0.14%
ADC
15
0.13%
DXS
15
0.13%
CYP80B1
13
0.11%
CHI
13
0.11%
HMGS
13
0.11%
TDC
10
0.09%
DET2
9
0.08%
MDS/IspF
9
0.08%
CYP80F1
8
0.07%
FLS
8
0.07%
DWF5
7
0.06%
HDR/IspH
6
0.05%
ODC
5
0.04%
CPI1
5
0.04%
DWF7
5
0.04%
6OMT_4OMT_SOMT
4
0.03%
XMT_MXMT_DXMT
3
0.03%
HYD1
3
0.03%
HDS/IspG
3
0.03%
FK
2
0.02%
DWF1
2
0.02%
GPPS
2
0.02%
CMK/IspE
2
0.02%
IDI
2
0.02%
PMK
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1391 | 21 | BAHD (633) | View species results |
| Alkaloid pathway | 1101 | 26 | NMT (205) | View species results |
| Phenylpropanoid pathway | 1001 | 12 | POD (408) | View species results |
| Flavonoid pathway | 512 | 12 | UFGT (312) | View species results |
| Rosmarinic acid pathway | 384 | 7 | C4H (133) | View species results |
| Steroid pathway | 307 | 13 | CAS (153) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4458 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1021 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GtomD09G0013770.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD09G0015480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD09G0016520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD09G0023770.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD09G0023810.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD09G0024320.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD10G0007600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0007610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0007610.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0008450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0008460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0022230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0025890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0025890.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD10G0025890.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0011030.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0011760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0011770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0023950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0024600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0024630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0024630.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0024630.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD11G0037180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD11G0037300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD11G0041000.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD12G0018980.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| GtomD12G0020560.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD12G0024220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD12G0031630.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD13G0002380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD13G0011920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GtomD13G0023940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GtomD13G0028250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gtomscaffold_1400000280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gtomscaffold_1400000330.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Gtomscaffold_2770001440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Gtomscaffold_2770001450.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |