PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GtomD08G0016190.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD08G0016190.2 Phenylpropanoid F5H/CYP84A medium borderline
GtomD08G0022090.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD09G0016700.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD10G0025330.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD10G0027540.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD11G0000790.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD11G0000800.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD11G0000820.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD11G0011310.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD12G0004680.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD12G0013930.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD12G0016990.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD12G0028280.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD12G0030950.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomD13G0010940.1 Phenylpropanoid F5H/CYP84A medium borderline
Gtomscaffold_4860002310.1 Phenylpropanoid F5H/CYP84A medium borderline
GtomA01G0012510.1 Phenylpropanoid HCT low borderline
GtomA03G0003700.1 Phenylpropanoid HCT low borderline
GtomA03G0007380.1 Phenylpropanoid HCT medium pass
GtomA03G0007380.2 Phenylpropanoid HCT medium pass
GtomA03G0007380.3 Phenylpropanoid HCT medium pass
GtomA03G0015710.1 Phenylpropanoid HCT low borderline
GtomA03G0021060.1 Phenylpropanoid HCT low borderline
GtomA04G0012290.1 Phenylpropanoid HCT low borderline
GtomA04G0013840.1 Phenylpropanoid HCT low borderline
GtomA04G0018130.1 Phenylpropanoid HCT low borderline
GtomA05G0005770.1 Phenylpropanoid HCT medium pass
GtomA05G0005790.1 Phenylpropanoid HCT medium pass
GtomA05G0012550.1 Phenylpropanoid HCT low borderline
GtomA05G0012570.1 Phenylpropanoid HCT low borderline
GtomA05G0012700.1 Phenylpropanoid HCT medium pass
GtomA05G0012700.2 Phenylpropanoid HCT medium pass
GtomA05G0019480.1 Phenylpropanoid HCT low borderline
GtomA05G0033970.1 Phenylpropanoid HCT low borderline
GtomA05G0036050.1 Phenylpropanoid HCT low borderline
GtomA05G0036930.1 Phenylpropanoid HCT low borderline
GtomA05G0037230.1 Phenylpropanoid HCT medium pass
GtomA05G0037860.1 Phenylpropanoid HCT medium pass
GtomA06G0000860.1 Phenylpropanoid HCT low borderline
GtomA06G0007240.1 Phenylpropanoid HCT low borderline
GtomA06G0022840.1 Phenylpropanoid HCT medium pass
GtomA06G0022850.1 Phenylpropanoid HCT medium pass
GtomA06G0022930.1 Phenylpropanoid HCT medium pass
GtomA06G0022960.1 Phenylpropanoid HCT medium pass
GtomA06G0022970.1 Phenylpropanoid HCT medium pass
GtomA07G0005720.1 Phenylpropanoid HCT medium pass
GtomA07G0011290.1 Phenylpropanoid HCT low borderline
GtomA07G0026890.1 Phenylpropanoid HCT low borderline
GtomA08G0026930.1 Phenylpropanoid HCT low borderline