PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GtomA13G0012910.1 Alkaloid PMT medium pass
GtomA13G0012920.1 Alkaloid PMT medium pass
GtomA13G0019060.1 Alkaloid PMT medium pass
GtomA13G0019100.1 Alkaloid PMT low borderline
GtomD02G0005640.2 Alkaloid PMT low borderline
GtomD02G0020700.1 Alkaloid PMT medium borderline
GtomD03G0014150.1 Alkaloid PMT low borderline
GtomD04G0008330.1 Alkaloid PMT low borderline
GtomD04G0008920.1 Alkaloid PMT medium pass
GtomD05G0005910.1 Alkaloid PMT low borderline
GtomD05G0005930.1 Alkaloid PMT low borderline
GtomD05G0006070.1 Alkaloid PMT low borderline
GtomD05G0006070.2 Alkaloid PMT low borderline
GtomD05G0006110.1 Alkaloid PMT low borderline
GtomD05G0012810.1 Alkaloid PMT low borderline
GtomD05G0019800.1 Alkaloid PMT low borderline
GtomD06G0010600.1 Alkaloid PMT medium pass
GtomD07G0007130.1 Alkaloid PMT medium borderline
GtomD08G0012140.1 Alkaloid PMT medium borderline
GtomD08G0012140.2 Alkaloid PMT medium borderline
GtomD08G0020930.1 Alkaloid PMT low borderline
GtomD10G0009430.1 Alkaloid PMT medium pass
GtomD10G0017880.1 Alkaloid PMT low borderline
GtomD10G0024020.1 Alkaloid PMT low borderline
GtomD10G0031760.1 Alkaloid PMT low borderline
GtomD11G0011840.1 Alkaloid PMT medium pass
GtomD11G0026810.1 Alkaloid PMT medium pass
GtomD11G0026830.1 Alkaloid PMT low borderline
GtomD12G0029440.1 Alkaloid PMT medium borderline
GtomD12G0029440.2 Alkaloid PMT medium borderline
GtomD12G0029440.3 Alkaloid PMT medium borderline
GtomD13G0013270.1 Alkaloid PMT medium pass
GtomD13G0013280.1 Alkaloid PMT medium pass
GtomD13G0013290.1 Alkaloid PMT medium pass
GtomD13G0013300.1 Alkaloid PMT medium pass
GtomD13G0019950.1 Alkaloid PMT medium pass
Gtomscaffold_3520001730.1 Alkaloid PMT medium pass
GtomA01G0000600.1 Alkaloid PYKS low borderline
GtomA01G0000610.1 Alkaloid PYKS low borderline
GtomA02G0003110.1 Alkaloid PYKS high pass
GtomA03G0009980.1 Alkaloid PYKS low borderline
GtomA03G0009980.2 Alkaloid PYKS low borderline
GtomA03G0017490.1 Alkaloid PYKS low borderline
GtomA03G0023100.1 Alkaloid PYKS low borderline
GtomA05G0002190.1 Alkaloid PYKS low borderline
GtomA05G0010580.1 Alkaloid PYKS low borderline
GtomA05G0020940.1 Alkaloid PYKS low borderline
GtomA05G0026090.1 Alkaloid PYKS high pass
GtomA05G0026210.1 Alkaloid PYKS medium pass
GtomA05G0026220.1 Alkaloid PYKS high pass