Leavenworthia alabamica (leavenworthia_alabamica)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 27.76% Alkaloid pathway 24.06% Phenylpropanoid pathway 23.18% Flavonoid pathway 11.05% Rosmarinic acid pathway 7.27% Steroid pathway 6.69%

Family Distribution

1376 Candidate Genes

BAHD 6.41% C4H 6.02% C3'H/CYP98A 5.6% POD 5.45% NMT 4.36% CYP76 4.0% 4CL 3.7% IFS 3.43%

Other Families 61.04%

More Families (95)

UGT 111 3.34% 7DLGT 99 2.98% UFGT 97 2.92% T3O 91 2.74% F3H 78 2.35% DWF4/CYP90B1 73 2.2% BR6OX2/CYP85A2 68 2.05% CODM/T6ODM 63 1.9% STR 61 1.84% SMT1/SMT2/SMT3 58 1.74% F3'H/CYP75B 54 1.62% CSE 49 1.47% CYP71 49 1.47% SGD 47 1.41% CAD 45 1.35% IFR 44 1.32% TRI/TRII 40 1.2% H6H 37 1.11% PYKS 36 1.08% LAC 31 0.93% BBE 29 0.87% T16H 28 0.84% CAS 28 0.84% ANR 27 0.81% TPS 25 0.75% G8O/G8H 24 0.72% IO 24 0.72% RAS 24 0.72% FNS 23 0.69% CCR 23 0.69% GES 21 0.63% GS 21 0.63% CYP90D1 20 0.6% 7DLH 19 0.57% F5H/CYP84A 19 0.57% TAT 19 0.57% F3'5'H/CYP75A 18 0.54% HCT 17 0.51% GGPPS 17 0.51% LAMT 16 0.48% ANS/LDOX 16 0.48% SLS 15 0.45% PAL 15 0.45% COMT 15 0.45% 8HGO 12 0.36% CPD/CYP90A1 12 0.36% MPO 11 0.33% PMT 11 0.33% CYP51G1 11 0.33% BR6OX1/CYP85A1 11 0.33% COR 10 0.3% 16OMT 10 0.3% CPR 10 0.3% SQE 10 0.3% AACT 10 0.3% FPPS 10 0.3% CYP80B1 9 0.27% CHS 9 0.27% ROT3/CYP90C1 9 0.27% SMO1/SMO2 9 0.27% NCS 8 0.24% CNMT 7 0.21% CYP719 7 0.21% SQS/FDFT1 7 0.21% DFR 6 0.18% CCoAOMT 6 0.18% HMGR 6 0.18% ISY 5 0.15% DET2 5 0.15% DXS 5 0.15% HDS/IspG 5 0.15% MVK 5 0.15% MVD 5 0.15% CYP80F1 4 0.12% HYD1 4 0.12% IDI 4 0.12% TDC 3 0.09% ADC 3 0.09% CHI 3 0.09% HPPR 3 0.09% DWF7 3 0.09% HDR/IspH 3 0.09% PMK 3 0.09% 6OMT_4OMT_SOMT 2 0.06% TYDC_DDC 2 0.06% FLS 2 0.06% DWF1 2 0.06% DWF5 2 0.06% FK 2 0.06% CMK/IspE 2 0.06% MCT/IspD 2 0.06% MDS/IspF 2 0.06% CPI1 1 0.03% HMGS 1 0.03% DXR 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	382	19	BAHD (155)	View species results
Alkaloid pathway	331	22	NMT (92)	View species results
Phenylpropanoid pathway	319	11	POD (162)	View species results
Flavonoid pathway	152	9	UFGT (94)	View species results
Rosmarinic acid pathway	100	7	C4H (36)	View species results
Steroid pathway	92	12	SMT1/SMT2/SMT3 (32)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1198	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	254	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CAS

Gene	Pathway	Family	Confidence	Status	Best Target
LalaLA_scaffold12390091470	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold13980109120	Steroid	CAS	medium	pass	CAS__00005__sp_P38605_CAS1_ARATH
LalaLA_scaffold14450114420	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold14450114440	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold14600115690	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold14680117350	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold1560131670	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold18430163930	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold18840168280	Steroid	CAS	low	borderline	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold2070184490	Steroid	CAS	medium	pass	CAS__00005__sp_P38605_CAS1_ARATH
LalaLA_scaffold2090186870	Steroid	CAS	medium	pass	CAS__00005__sp_P38605_CAS1_ARATH
LalaLA_scaffold21740194350	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold23380209010	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold27810242760	Steroid	CAS	medium	pass	CAS__00012__sp_Q9FN48_CAS_ARATH
LalaLA_scaffold28430246370	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold29890254580	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold32460272290	Steroid	CAS	medium	pass	CAS__00014__sp_Q9SXV6_CAS1_GLYGL
LalaLA_scaffold32460272300	Steroid	CAS	medium	pass	CAS__00004__sp_O82139_CAS1_PANGI
LalaLA_scaffold33140275410	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold33220275790	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold34960286390	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold3620295150	Steroid	CAS	medium	pass	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold5570320910	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold7180346500	Steroid	CAS	medium	pass	CAS__00005__sp_P38605_CAS1_ARATH
LalaLA_scaffold770353910	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA
LalaLA_scaffold8010355480	Steroid	CAS	low	borderline	CAS__00007__sp_Q43153_CYSC_SPIOL
LalaLA_scaffold8120357520	Steroid	CAS	medium	pass	CAS__00014__sp_Q9SXV6_CAS1_GLYGL
LalaLA_scaffold8960371980	Steroid	CAS	medium	pass	CAS__00003__sp_H8ZM73_CAS_ABIBA