Leavenworthia alabamica (leavenworthia_alabamica)
Imported from atlas release summary for Leavenworthia alabamica.
1376
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1376
Candidate Genes
BAHD
6.41%
C4H
6.02%
C3'H/CYP98A
5.6%
POD
5.45%
NMT
4.36%
CYP76
4.0%
4CL
3.7%
IFS
3.43%
Other Families
61.04%
More Families (95)
UGT
111
3.34%
7DLGT
99
2.98%
UFGT
97
2.92%
T3O
91
2.74%
F3H
78
2.35%
DWF4/CYP90B1
73
2.2%
BR6OX2/CYP85A2
68
2.05%
CODM/T6ODM
63
1.9%
STR
61
1.84%
SMT1/SMT2/SMT3
58
1.74%
F3'H/CYP75B
54
1.62%
CSE
49
1.47%
CYP71
49
1.47%
SGD
47
1.41%
CAD
45
1.35%
IFR
44
1.32%
TRI/TRII
40
1.2%
H6H
37
1.11%
PYKS
36
1.08%
LAC
31
0.93%
BBE
29
0.87%
T16H
28
0.84%
CAS
28
0.84%
ANR
27
0.81%
TPS
25
0.75%
G8O/G8H
24
0.72%
IO
24
0.72%
RAS
24
0.72%
FNS
23
0.69%
CCR
23
0.69%
GES
21
0.63%
GS
21
0.63%
CYP90D1
20
0.6%
7DLH
19
0.57%
F5H/CYP84A
19
0.57%
TAT
19
0.57%
F3'5'H/CYP75A
18
0.54%
HCT
17
0.51%
GGPPS
17
0.51%
LAMT
16
0.48%
ANS/LDOX
16
0.48%
SLS
15
0.45%
PAL
15
0.45%
COMT
15
0.45%
8HGO
12
0.36%
CPD/CYP90A1
12
0.36%
MPO
11
0.33%
PMT
11
0.33%
CYP51G1
11
0.33%
BR6OX1/CYP85A1
11
0.33%
COR
10
0.3%
16OMT
10
0.3%
CPR
10
0.3%
SQE
10
0.3%
AACT
10
0.3%
FPPS
10
0.3%
CYP80B1
9
0.27%
CHS
9
0.27%
ROT3/CYP90C1
9
0.27%
SMO1/SMO2
9
0.27%
NCS
8
0.24%
CNMT
7
0.21%
CYP719
7
0.21%
SQS/FDFT1
7
0.21%
DFR
6
0.18%
CCoAOMT
6
0.18%
HMGR
6
0.18%
ISY
5
0.15%
DET2
5
0.15%
DXS
5
0.15%
HDS/IspG
5
0.15%
MVK
5
0.15%
MVD
5
0.15%
CYP80F1
4
0.12%
HYD1
4
0.12%
IDI
4
0.12%
TDC
3
0.09%
ADC
3
0.09%
CHI
3
0.09%
HPPR
3
0.09%
DWF7
3
0.09%
HDR/IspH
3
0.09%
PMK
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
TYDC_DDC
2
0.06%
FLS
2
0.06%
DWF1
2
0.06%
DWF5
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
MCT/IspD
2
0.06%
MDS/IspF
2
0.06%
CPI1
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 382 | 19 | BAHD (155) | View species results |
| Alkaloid pathway | 331 | 22 | NMT (92) | View species results |
| Phenylpropanoid pathway | 319 | 11 | POD (162) | View species results |
| Flavonoid pathway | 152 | 9 | UFGT (94) | View species results |
| Rosmarinic acid pathway | 100 | 7 | C4H (36) | View species results |
| Steroid pathway | 92 | 12 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1198 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 254 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| LalaLA_C303130017090 | Alkaloid | SGD | medium | pass |
| LalaLA_C383630024380 | Alkaloid | SGD | medium | pass |
| LalaLA_C655070047600 | Alkaloid | SGD | medium | pass |
| LalaLA_C656550047700 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold10470066030 | Alkaloid | SGD | medium | borderline |
| LalaLA_scaffold10530067010 | Alkaloid | SGD | low | borderline |
| LalaLA_scaffold11260074210 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold12020085920 | Alkaloid | SGD | low | borderline |
| LalaLA_scaffold12020085930 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold12360090570 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold13290102720 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold14680117360 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold1480118440 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold15470129460 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold15990137030 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold15990137040 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold16850145210 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17000147600 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17000147610 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17170150490 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17220150880 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17370152400 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold17730155970 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold1790158710 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold18110160790 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold18110160800 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold20000177770 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold21100189260 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold2120189940 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold21500192480 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold21500192490 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold21740194220 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold22470201720 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold23280208160 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold23280208170 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold23280208180 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold23280208190 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold23280208200 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold2410214880 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold34030279680 | Alkaloid | SGD | low | borderline |
| LalaLA_scaffold3620295940 | Alkaloid | SGD | low | borderline |
| LalaLA_scaffold5050314050 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold5960327530 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold6010329220 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold6010329230 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold6900341560 | Alkaloid | SGD | medium | pass |
| LalaLA_scaffold6980343190 | Alkaloid | SGD | medium | pass |