PlantSME Plant secondary metabolism enzyme database

Leavenworthia alabamica (leavenworthia_alabamica)

Imported from atlas release summary for Leavenworthia alabamica.

1376
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.76% Alkaloid pathway 24.06% Phenylpropanoid pathway 23.18% Flavonoid pathway 11.05% Rosmarinic acid pathway 7.27% Steroid pathway 6.69%
Family Distribution
BAHD 6.41% C4H 6.02% C3'H/CYP98A 5.6% POD 5.45% NMT 4.36% CYP76 4.0% 4CL 3.7% IFS 3.43%
Other Families 61.04%
More Families (95)
UGT 111 3.34% 7DLGT 99 2.98% UFGT 97 2.92% T3O 91 2.74% F3H 78 2.35% DWF4/CYP90B1 73 2.2% BR6OX2/CYP85A2 68 2.05% CODM/T6ODM 63 1.9% STR 61 1.84% SMT1/SMT2/SMT3 58 1.74% F3'H/CYP75B 54 1.62% CSE 49 1.47% CYP71 49 1.47% SGD 47 1.41% CAD 45 1.35% IFR 44 1.32% TRI/TRII 40 1.2% H6H 37 1.11% PYKS 36 1.08% LAC 31 0.93% BBE 29 0.87% T16H 28 0.84% CAS 28 0.84% ANR 27 0.81% TPS 25 0.75% G8O/G8H 24 0.72% IO 24 0.72% RAS 24 0.72% FNS 23 0.69% CCR 23 0.69% GES 21 0.63% GS 21 0.63% CYP90D1 20 0.6% 7DLH 19 0.57% F5H/CYP84A 19 0.57% TAT 19 0.57% F3'5'H/CYP75A 18 0.54% HCT 17 0.51% GGPPS 17 0.51% LAMT 16 0.48% ANS/LDOX 16 0.48% SLS 15 0.45% PAL 15 0.45% COMT 15 0.45% 8HGO 12 0.36% CPD/CYP90A1 12 0.36% MPO 11 0.33% PMT 11 0.33% CYP51G1 11 0.33% BR6OX1/CYP85A1 11 0.33% COR 10 0.3% 16OMT 10 0.3% CPR 10 0.3% SQE 10 0.3% AACT 10 0.3% FPPS 10 0.3% CYP80B1 9 0.27% CHS 9 0.27% ROT3/CYP90C1 9 0.27% SMO1/SMO2 9 0.27% NCS 8 0.24% CNMT 7 0.21% CYP719 7 0.21% SQS/FDFT1 7 0.21% DFR 6 0.18% CCoAOMT 6 0.18% HMGR 6 0.18% ISY 5 0.15% DET2 5 0.15% DXS 5 0.15% HDS/IspG 5 0.15% MVK 5 0.15% MVD 5 0.15% CYP80F1 4 0.12% HYD1 4 0.12% IDI 4 0.12% TDC 3 0.09% ADC 3 0.09% CHI 3 0.09% HPPR 3 0.09% DWF7 3 0.09% HDR/IspH 3 0.09% PMK 3 0.09% 6OMT_4OMT_SOMT 2 0.06% TYDC_DDC 2 0.06% FLS 2 0.06% DWF1 2 0.06% DWF5 2 0.06% FK 2 0.06% CMK/IspE 2 0.06% MCT/IspD 2 0.06% MDS/IspF 2 0.06% CPI1 1 0.03% HMGS 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 382 19 BAHD (155) View species results
Alkaloid pathway 331 22 NMT (92) View species results
Phenylpropanoid pathway 319 11 POD (162) View species results
Flavonoid pathway 152 9 UFGT (94) View species results
Rosmarinic acid pathway 100 7 C4H (36) View species results
Steroid pathway 92 12 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1198 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 254 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status Best Target
LalaLA_C64310046310 Alkaloid LAMT low borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold10070060760 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold15350127740 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold17550154590 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold17550154620 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold2320207120 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold2440218650 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold26580233550 Alkaloid LAMT low borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold2720237950 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold27350239900 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold2760241750 Alkaloid LAMT low borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold5300317710 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold7520352120 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold8860370180 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold9260375630 Alkaloid LAMT medium pass LAMT__00001__sp_B2KPR3_LAMT_CATRO
LalaLA_scaffold9260375680 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO