PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA03G0084100.1 Alkaloid PYKS low borderline
ORGLA03G0099700.1 Alkaloid PYKS low borderline
ORGLA03G0183900.1 Alkaloid PYKS low borderline
ORGLA03G0184100.1 Alkaloid PYKS low borderline
ORGLA04G0001800.1 Alkaloid PYKS high pass
ORGLA04G0006800.1 Alkaloid PYKS low borderline
ORGLA05G0062100.1 Alkaloid PYKS high pass
ORGLA05G0062200.1 Alkaloid PYKS high pass
ORGLA05G0062300.1 Alkaloid PYKS high pass
ORGLA05G0062500.1 Alkaloid PYKS high pass
ORGLA05G0187000.1 Alkaloid PYKS medium pass
ORGLA05G0226500.1 Alkaloid PYKS low borderline
ORGLA05G0231200.1 Alkaloid PYKS low borderline
ORGLA06G0094300.1 Alkaloid PYKS low borderline
ORGLA06G0094500.1 Alkaloid PYKS low borderline
ORGLA06G0094600.1 Alkaloid PYKS low borderline
ORGLA06G0094800.1 Alkaloid PYKS low borderline
ORGLA06G0166300.1 Alkaloid PYKS low borderline
ORGLA07G0061400.1 Alkaloid PYKS high pass
ORGLA07G0083000.1 Alkaloid PYKS high pass
ORGLA07G0097400.1 Alkaloid PYKS high pass
ORGLA07G0125000.1 Alkaloid PYKS high pass
ORGLA07G0125100.1 Alkaloid PYKS high pass
ORGLA07G0138400.1 Alkaloid PYKS high pass
ORGLA07G0138800.1 Alkaloid PYKS high pass
ORGLA07G0219500.1 Alkaloid PYKS medium pass
ORGLA07G0226500.1 Alkaloid PYKS high pass
ORGLA07G0236800.1 Alkaloid PYKS high pass
ORGLA10G0024100.1 Alkaloid PYKS high pass
ORGLA10G0025900.1 Alkaloid PYKS high pass
ORGLA10G0028900.1 Alkaloid PYKS high pass
ORGLA10G0029100.1 Alkaloid PYKS high pass
ORGLA10G0029300.1 Alkaloid PYKS high pass
ORGLA10G0086400.1 Alkaloid PYKS low borderline
ORGLA11G0131900.1 Alkaloid PYKS high pass
ORGLA11G0132100.1 Alkaloid PYKS high pass
ORGLA11G0132300.1 Alkaloid PYKS high pass
ORGLA11G0132400.1 Alkaloid PYKS high pass
ORGLA11G0132700.1 Alkaloid PYKS high pass
ORGLA11G0155100.1 Alkaloid PYKS low borderline
ORGLA11G0217900.1 Alkaloid PYKS high pass
ORGLA12G0042900.1 Alkaloid PYKS medium pass
ORGLA01G0286500.1 Alkaloid SGD medium pass
ORGLA01G0286600.1 Alkaloid SGD medium pass
ORGLA01G0344200.1 Alkaloid SGD medium pass
ORGLA01G0365400.1 Alkaloid SGD medium pass
ORGLA03G0079200.1 Alkaloid SGD medium pass
ORGLA03G0285000.1 Alkaloid SGD medium pass
ORGLA03G0287400.1 Alkaloid SGD medium pass
ORGLA04G0128800.1 Alkaloid SGD medium pass