Oryza glaberrima (oryza_glaberrima)
Imported from atlas release summary for Oryza glaberrima.
1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3976
Family-Level Calls
C4H
6.36%
C3'H/CYP98A
6.16%
BAHD
5.33%
UGT
4.98%
POD
4.65%
7DLGT
4.55%
UFGT
4.48%
T3O
3.75%
Other Families
59.73%
More Families (97)
IFS
146
3.67%
4CL
117
2.94%
CYP76
116
2.92%
F3'H/CYP75B
95
2.39%
DWF4/CYP90B1
90
2.26%
BR6OX2/CYP85A2
89
2.24%
CYP71
77
1.94%
F3H
75
1.89%
NMT
72
1.81%
TRI/TRII
54
1.36%
SMT1/SMT2/SMT3
53
1.33%
STR
52
1.31%
CAD
50
1.26%
PYKS
48
1.21%
TPS
45
1.13%
GES
40
1.01%
CCR
40
1.01%
CODM/T6ODM
39
0.98%
ANR
39
0.98%
G8O/G8H
38
0.96%
SGD
38
0.96%
CSE
37
0.93%
HCT
36
0.91%
RAS
35
0.88%
CAS
35
0.88%
PMT
34
0.86%
H6H
34
0.86%
LAC
34
0.86%
COMT
34
0.86%
SLS
33
0.83%
IFR
33
0.83%
T16H
31
0.78%
16OMT
31
0.78%
FNS
31
0.78%
CHS
29
0.73%
CYP90D1
28
0.7%
CYP51G1
25
0.63%
PAL
24
0.6%
F5H/CYP84A
24
0.6%
GS
23
0.58%
LAMT
21
0.53%
DFR
21
0.53%
CPD/CYP90A1
20
0.5%
NCS
19
0.48%
IO
15
0.38%
BR6OX1/CYP85A1
15
0.38%
BBE
14
0.35%
F3'5'H/CYP75A
14
0.35%
COR
13
0.33%
8HGO
13
0.33%
CNMT
11
0.28%
7DLH
11
0.28%
CYP80B1
10
0.25%
TAT
10
0.25%
FPPS
10
0.25%
XMT_MXMT_DXMT
9
0.23%
TYDC_DDC
8
0.2%
CPR
8
0.2%
ROT3/CYP90C1
8
0.2%
CYP719
7
0.18%
MPO
6
0.15%
CCoAOMT
6
0.15%
SQS/FDFT1
6
0.15%
AACT
6
0.15%
ADC
5
0.13%
HPPR
5
0.13%
GGPPS
5
0.13%
MVD
5
0.13%
HMGR
5
0.13%
MVK
5
0.13%
TDC
4
0.1%
FLS
4
0.1%
ANS/LDOX
4
0.1%
MCT/IspD
4
0.1%
CYP80F1
3
0.08%
CHI
3
0.08%
DET2
3
0.08%
SMO1/SMO2
3
0.08%
DWF1
3
0.08%
HMGS
3
0.08%
ISY
2
0.05%
HYD1
2
0.05%
FK
2
0.05%
SQE
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
HDR/IspH
2
0.05%
IDI
2
0.05%
DXS
2
0.05%
ODC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 457 | 19 | UGT (179) | View species results |
| Alkaloid pathway | 371 | 23 | 7DLGT (76) | View species results |
| Phenylpropanoid pathway | 341 | 13 | POD (176) | View species results |
| Flavonoid pathway | 266 | 13 | UFGT (169) | View species results |
| Rosmarinic acid pathway | 129 | 7 | C4H (67) | View species results |
| Steroid pathway | 86 | 14 | SMT1/SMT2/SMT3 (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1542 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 283 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ORGLA04G0128900.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0129000.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0129100.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0156800.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0157000.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0157100.1 | Alkaloid | SGD | medium | pass |
| ORGLA04G0157200.1 | Alkaloid | SGD | medium | pass |
| ORGLA05G0117100.1 | Alkaloid | SGD | medium | pass |
| ORGLA05G0117200.1 | Alkaloid | SGD | medium | pass |
| ORGLA05G0117300.1 | Alkaloid | SGD | medium | pass |
| ORGLA05G0117600.1 | Alkaloid | SGD | medium | pass |
| ORGLA05G0117700.1 | Alkaloid | SGD | medium | pass |
| ORGLA06G0289700.1 | Alkaloid | SGD | medium | pass |
| ORGLA07G0192200.1 | Alkaloid | SGD | low | borderline |
| ORGLA07G0267600.1 | Alkaloid | SGD | medium | pass |
| ORGLA07G0267700.1 | Alkaloid | SGD | medium | pass |
| ORGLA07G0267800.1 | Alkaloid | SGD | medium | pass |
| ORGLA07G0268100.1 | Alkaloid | SGD | medium | pass |
| ORGLA07G0268200.1 | Alkaloid | SGD | medium | pass |
| ORGLA08G0176200.1 | Alkaloid | SGD | medium | pass |
| ORGLA08G0176300.1 | Alkaloid | SGD | medium | pass |
| ORGLA09G0113700.1 | Alkaloid | SGD | medium | pass |
| ORGLA09G0113900.1 | Alkaloid | SGD | medium | pass |
| ORGLA09G0125000.1 | Alkaloid | SGD | medium | pass |
| ORGLA09G0125100.1 | Alkaloid | SGD | medium | pass |
| ORGLA09G0125300.1 | Alkaloid | SGD | medium | pass |
| ORGLA10G0047200.1 | Alkaloid | SGD | medium | pass |
| ORGLA11G0049500.1 | Alkaloid | SGD | medium | pass |
| ORGLA11G0184100.1 | Alkaloid | SGD | low | borderline |
| ORGLA12G0092800.1 | Alkaloid | SGD | medium | pass |
| ORGLA01G0121000.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0134000.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0173600.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0173700.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0173800.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189200.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189300.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189500.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189600.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189700.1 | Alkaloid | SLS | medium | borderline |
| ORGLA01G0189800.1 | Alkaloid | SLS | medium | borderline |
| ORGLA02G0075200.1 | Alkaloid | SLS | medium | borderline |
| ORGLA02G0205400.1 | Alkaloid | SLS | low | borderline |
| ORGLA02G0331300.1 | Alkaloid | SLS | medium | borderline |
| ORGLA03G0177900.1 | Alkaloid | SLS | medium | borderline |
| ORGLA03G0178100.1 | Alkaloid | SLS | medium | borderline |
| ORGLA03G0178200.1 | Alkaloid | SLS | medium | pass |
| ORGLA04G0194000.1 | Alkaloid | SLS | medium | borderline |
| ORGLA05G0139300.1 | Alkaloid | SLS | medium | borderline |
| ORGLA05G0139500.1 | Alkaloid | SLS | medium | borderline |