PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
ORGLA04G0043200.1 Alkaloid 7DLGT low borderline
ORGLA04G0043500.1 Alkaloid 7DLGT low borderline
ORGLA04G0043700.1 Alkaloid 7DLGT low borderline
ORGLA04G0053300.1 Alkaloid 7DLGT low borderline
ORGLA04G0056500.1 Alkaloid 7DLGT medium pass
ORGLA04G0056600.1 Alkaloid 7DLGT medium pass
ORGLA04G0057100.1 Alkaloid 7DLGT medium pass
ORGLA04G0057300.1 Alkaloid 7DLGT medium pass
ORGLA04G0057800.1 Alkaloid 7DLGT medium pass
ORGLA04G0113800.1 Alkaloid 7DLGT medium pass
ORGLA04G0151400.1 Alkaloid 7DLGT low borderline
ORGLA04G0162200.1 Alkaloid 7DLGT low borderline
ORGLA04G0162300.1 Alkaloid 7DLGT low borderline
ORGLA04G0163100.1 Alkaloid 7DLGT low borderline
ORGLA04G0183100.1 Alkaloid 7DLGT low borderline
ORGLA04G0183200.1 Alkaloid 7DLGT medium pass
ORGLA04G0183300.1 Alkaloid 7DLGT medium pass
ORGLA04G0188800.1 Alkaloid 7DLGT medium pass
ORGLA04G0189000.1 Alkaloid 7DLGT medium pass
ORGLA04G0238900.1 Alkaloid 7DLGT low borderline
ORGLA05G0046300.1 Alkaloid 7DLGT low borderline
ORGLA05G0046500.1 Alkaloid 7DLGT medium pass
ORGLA05G0048000.1 Alkaloid 7DLGT low borderline
ORGLA05G0063600.1 Alkaloid 7DLGT low borderline
ORGLA05G0185000.1 Alkaloid 7DLGT low borderline
ORGLA05G0189600.1 Alkaloid 7DLGT low borderline
ORGLA05G0189700.1 Alkaloid 7DLGT low borderline
ORGLA05G0215800.1 Alkaloid 7DLGT low borderline
ORGLA06G0011600.1 Alkaloid 7DLGT low borderline
ORGLA06G0052500.1 Alkaloid 7DLGT low borderline
ORGLA06G0054600.1 Alkaloid 7DLGT medium pass
ORGLA06G0065800.1 Alkaloid 7DLGT low borderline
ORGLA06G0069300.1 Alkaloid 7DLGT low borderline
ORGLA06G0072500.1 Alkaloid 7DLGT medium pass
ORGLA06G0101100.1 Alkaloid 7DLGT low borderline
ORGLA06G0101300.1 Alkaloid 7DLGT medium pass
ORGLA06G0101400.1 Alkaloid 7DLGT low borderline
ORGLA06G0101600.1 Alkaloid 7DLGT low borderline
ORGLA06G0101800.1 Alkaloid 7DLGT low borderline
ORGLA06G0105200.1 Alkaloid 7DLGT medium pass
ORGLA06G0105400.1 Alkaloid 7DLGT high pass
ORGLA06G0105600.1 Alkaloid 7DLGT low borderline
ORGLA06G0105700.1 Alkaloid 7DLGT low borderline
ORGLA06G0105900.1 Alkaloid 7DLGT medium pass
ORGLA06G0124000.1 Alkaloid 7DLGT medium pass
ORGLA06G0162400.1 Alkaloid 7DLGT low borderline
ORGLA06G0162500.1 Alkaloid 7DLGT medium pass
ORGLA06G0164100.1 Alkaloid 7DLGT low borderline
ORGLA06G0164200.1 Alkaloid 7DLGT low borderline
ORGLA06G0239300.1 Alkaloid 7DLGT high pass