PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
ORGLA06G0241800.1 Alkaloid 7DLGT low borderline
ORGLA06G0242300.1 Alkaloid 7DLGT low borderline
ORGLA06G0242400.1 Alkaloid 7DLGT low borderline
ORGLA06G0255600.1 Alkaloid 7DLGT medium pass
ORGLA06G0289600.1 Alkaloid 7DLGT low borderline
ORGLA06G0289900.1 Alkaloid 7DLGT low borderline
ORGLA06G0290400.1 Alkaloid 7DLGT low borderline
ORGLA06G0290500.1 Alkaloid 7DLGT medium pass
ORGLA06G0300100.1 Alkaloid 7DLGT medium pass
ORGLA06G0300400.1 Alkaloid 7DLGT low borderline
ORGLA06G0300500.1 Alkaloid 7DLGT medium pass
ORGLA07G0026800.1 Alkaloid 7DLGT medium pass
ORGLA07G0055100.1 Alkaloid 7DLGT low borderline
ORGLA07G0055200.1 Alkaloid 7DLGT low borderline
ORGLA07G0055500.1 Alkaloid 7DLGT low borderline
ORGLA07G0071200.1 Alkaloid 7DLGT medium pass
ORGLA07G0071300.1 Alkaloid 7DLGT high pass
ORGLA07G0071400.1 Alkaloid 7DLGT medium pass
ORGLA07G0071700.1 Alkaloid 7DLGT high pass
ORGLA07G0071800.1 Alkaloid 7DLGT medium pass
ORGLA07G0072700.1 Alkaloid 7DLGT medium pass
ORGLA07G0075500.1 Alkaloid 7DLGT medium pass
ORGLA07G0126000.1 Alkaloid 7DLGT medium pass
ORGLA07G0126200.1 Alkaloid 7DLGT low borderline
ORGLA07G0126300.1 Alkaloid 7DLGT medium pass
ORGLA07G0126400.1 Alkaloid 7DLGT low borderline
ORGLA07G0126600.1 Alkaloid 7DLGT low borderline
ORGLA07G0129800.1 Alkaloid 7DLGT low borderline
ORGLA07G0129900.1 Alkaloid 7DLGT low borderline
ORGLA07G0152600.1 Alkaloid 7DLGT low borderline
ORGLA07G0175300.1 Alkaloid 7DLGT medium pass
ORGLA07G0203200.1 Alkaloid 7DLGT low borderline
ORGLA07G0220400.1 Alkaloid 7DLGT low borderline
ORGLA07G0220500.1 Alkaloid 7DLGT low borderline
ORGLA07G0236500.1 Alkaloid 7DLGT medium pass
ORGLA07G0236600.1 Alkaloid 7DLGT medium pass
ORGLA08G0035700.1 Alkaloid 7DLGT medium pass
ORGLA08G0036300.1 Alkaloid 7DLGT high pass
ORGLA08G0123000.1 Alkaloid 7DLGT medium pass
ORGLA08G0163700.1 Alkaloid 7DLGT low borderline
ORGLA08G0163900.1 Alkaloid 7DLGT low borderline
ORGLA09G0008000.1 Alkaloid 7DLGT medium pass
ORGLA09G0013400.1 Alkaloid 7DLGT low borderline
ORGLA09G0029900.1 Alkaloid 7DLGT low borderline
ORGLA09G0042500.1 Alkaloid 7DLGT low borderline
ORGLA09G0110600.1 Alkaloid 7DLGT low borderline
ORGLA09G0130300.1 Alkaloid 7DLGT low borderline
ORGLA09G0130400.1 Alkaloid 7DLGT low borderline
ORGLA09G0130600.1 Alkaloid 7DLGT low borderline
ORGLA10G0008400.1 Alkaloid 7DLGT low borderline