PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
ORGLA10G0026000.1 Alkaloid 7DLGT medium pass
ORGLA10G0031900.1 Alkaloid 7DLGT medium pass
ORGLA10G0046600.1 Alkaloid 7DLGT medium pass
ORGLA10G0050700.1 Alkaloid 7DLGT medium pass
ORGLA10G0101300.1 Alkaloid 7DLGT medium pass
ORGLA11G0025700.1 Alkaloid 7DLGT low borderline
ORGLA11G0103300.1 Alkaloid 7DLGT high pass
ORGLA11G0105300.1 Alkaloid 7DLGT medium pass
ORGLA11G0109300.1 Alkaloid 7DLGT low borderline
ORGLA11G0109800.1 Alkaloid 7DLGT low borderline
ORGLA11G0159500.1 Alkaloid 7DLGT medium pass
ORGLA12G0117200.1 Alkaloid 7DLGT low borderline
ORGLA12G0117300.1 Alkaloid 7DLGT low borderline
ORGLA01G0189400.1 Alkaloid 7DLH medium borderline
ORGLA01G0189900.1 Alkaloid 7DLH medium borderline
ORGLA01G0190000.1 Alkaloid 7DLH medium borderline
ORGLA04G0013000.1 Alkaloid 7DLH low borderline
ORGLA05G0120900.1 Alkaloid 7DLH medium borderline
ORGLA07G0100200.1 Alkaloid 7DLH medium borderline
ORGLA07G0187700.1 Alkaloid 7DLH low borderline
ORGLA11G0116100.1 Alkaloid 7DLH low borderline
ORGLA12G0008800.1 Alkaloid 7DLH medium borderline
ORGLA12G0019300.1 Alkaloid 7DLH medium borderline
ORGLA12G0109800.1 Alkaloid 7DLH low borderline
ORGLA03G0063100.1 Alkaloid 8HGO medium borderline
ORGLA03G0063200.1 Alkaloid 8HGO medium borderline
ORGLA03G0081000.1 Alkaloid 8HGO low borderline
ORGLA03G0113400.1 Alkaloid 8HGO low borderline
ORGLA07G0174900.1 Alkaloid 8HGO medium borderline
ORGLA07G0248900.1 Alkaloid 8HGO low borderline
ORGLA07G0259100.1 Alkaloid 8HGO low borderline
ORGLA08G0050000.1 Alkaloid 8HGO low borderline
ORGLA10G0165800.1 Alkaloid 8HGO medium borderline
ORGLA10G0167500.1 Alkaloid 8HGO low borderline
ORGLA11G0058300.1 Alkaloid 8HGO medium borderline
ORGLA11G0058400.1 Alkaloid 8HGO medium borderline
ORGLA11G0059500.1 Alkaloid 8HGO medium borderline
ORGLA03G0247600.1 Alkaloid ADC low borderline
ORGLA04G0003800.1 Alkaloid ADC medium pass
ORGLA06G0019600.1 Alkaloid ADC medium pass
ORGLA08G0137500.1 Alkaloid ADC low borderline
ORGLA08G0143500.1 Alkaloid ADC low borderline
ORGLA01G0183000.1 Alkaloid BBE low borderline
ORGLA02G0089800.1 Alkaloid BBE medium borderline
ORGLA06G0149300.1 Alkaloid BBE medium borderline
ORGLA06G0149400.1 Alkaloid BBE medium borderline
ORGLA06G0149500.1 Alkaloid BBE medium borderline
ORGLA06G0149700.1 Alkaloid BBE medium borderline
ORGLA06G0149800.1 Alkaloid BBE medium borderline
ORGLA06G0149900.1 Alkaloid BBE medium borderline