PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0150300.1 Alkaloid BBE medium borderline
ORGLA08G0029100.1 Alkaloid BBE medium borderline
ORGLA08G0029200.1 Alkaloid BBE medium borderline
ORGLA08G0029300.1 Alkaloid BBE medium borderline
ORGLA08G0102700.1 Alkaloid BBE medium borderline
ORGLA11G0121000.1 Alkaloid BBE medium borderline
ORGLA01G0012800.1 Alkaloid CNMT low borderline
ORGLA01G0152900.1 Alkaloid CNMT low borderline
ORGLA03G0348700.1 Alkaloid CNMT low borderline
ORGLA06G0020200.1 Alkaloid CNMT low borderline
ORGLA06G0034700.1 Alkaloid CNMT low borderline
ORGLA06G0038400.1 Alkaloid CNMT low borderline
ORGLA06G0158900.1 Alkaloid CNMT medium borderline
ORGLA07G0043000.1 Alkaloid CNMT low borderline
ORGLA11G0142200.1 Alkaloid CNMT low borderline
ORGLA12G0075500.1 Alkaloid CNMT medium pass
ORGLA12G0160800.1 Alkaloid CNMT low borderline
ORGLA01G0046300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA01G0122200.1 Alkaloid CODM/T6ODM medium borderline
ORGLA01G0129300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA01G0153100.1 Alkaloid CODM/T6ODM medium borderline
ORGLA01G0255600.1 Alkaloid CODM/T6ODM medium borderline
ORGLA02G0110100.1 Alkaloid CODM/T6ODM medium borderline
ORGLA02G0125100.1 Alkaloid CODM/T6ODM medium borderline
ORGLA02G0141900.1 Alkaloid CODM/T6ODM low borderline
ORGLA02G0216400.1 Alkaloid CODM/T6ODM medium borderline
ORGLA02G0292600.1 Alkaloid CODM/T6ODM medium borderline
ORGLA03G0015300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA03G0066700.1 Alkaloid CODM/T6ODM low borderline
ORGLA03G0242800.1 Alkaloid CODM/T6ODM medium borderline
ORGLA03G0286800.1 Alkaloid CODM/T6ODM medium borderline
ORGLA03G0385200.1 Alkaloid CODM/T6ODM medium borderline
ORGLA03G0387400.1 Alkaloid CODM/T6ODM medium borderline
ORGLA04G0161500.1 Alkaloid CODM/T6ODM medium borderline
ORGLA04G0198300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA05G0019500.1 Alkaloid CODM/T6ODM medium borderline
ORGLA05G0038400.1 Alkaloid CODM/T6ODM medium borderline
ORGLA05G0046700.1 Alkaloid CODM/T6ODM medium borderline
ORGLA05G0146800.1 Alkaloid CODM/T6ODM medium borderline
ORGLA05G0221300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0038300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0046100.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0046300.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0091500.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0091600.1 Alkaloid CODM/T6ODM medium borderline
ORGLA06G0158700.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0066800.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0118100.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0118400.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0118500.1 Alkaloid CODM/T6ODM medium borderline