PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA08G0158400.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0190200.1 Alkaloid CODM/T6ODM medium borderline
ORGLA08G0196000.1 Alkaloid CODM/T6ODM medium borderline
ORGLA09G0165600.1 Alkaloid CODM/T6ODM medium borderline
ORGLA10G0117500.1 Alkaloid CODM/T6ODM medium borderline
ORGLA11G0052100.1 Alkaloid CODM/T6ODM low borderline
ORGLA01G0310500.1 Alkaloid COR medium pass
ORGLA01G0310600.1 Alkaloid COR medium pass
ORGLA01G0310700.1 Alkaloid COR medium pass
ORGLA02G0017100.1 Alkaloid COR medium pass
ORGLA03G0094100.1 Alkaloid COR medium pass
ORGLA04G0110600.1 Alkaloid COR low borderline
ORGLA04G0110700.1 Alkaloid COR medium pass
ORGLA05G0164600.1 Alkaloid COR medium pass
ORGLA07G0023600.1 Alkaloid COR low borderline
ORGLA10G0005700.1 Alkaloid COR medium pass
ORGLA10G0005800.1 Alkaloid COR medium pass
ORGLA10G0005900.1 Alkaloid COR medium pass
ORGLA10G0006100.1 Alkaloid COR medium pass
ORGLA02G0082000.1 Alkaloid CYP719 medium borderline
ORGLA04G0018200.1 Alkaloid CYP719 medium borderline
ORGLA04G0126200.1 Alkaloid CYP719 medium borderline
ORGLA04G0273100.1 Alkaloid CYP719 medium borderline
ORGLA06G0157300.1 Alkaloid CYP719 medium borderline
ORGLA06G0180500.1 Alkaloid CYP719 medium borderline
ORGLA12G0193800.1 Alkaloid CYP719 medium borderline
ORGLA01G0291500.1 Alkaloid CYP80B1 medium borderline
ORGLA02G0126400.1 Alkaloid CYP80B1 medium borderline
ORGLA03G0231000.1 Alkaloid CYP80B1 medium borderline
ORGLA04G0018800.1 Alkaloid CYP80B1 medium borderline
ORGLA06G0016100.1 Alkaloid CYP80B1 low borderline
ORGLA06G0157100.1 Alkaloid CYP80B1 medium borderline
ORGLA07G0090400.1 Alkaloid CYP80B1 low borderline
ORGLA07G0244100.1 Alkaloid CYP80B1 medium borderline
ORGLA09G0088900.1 Alkaloid CYP80B1 medium pass
ORGLA12G0054500.1 Alkaloid CYP80B1 medium borderline
ORGLA02G0008800.1 Alkaloid CYP80F1 medium borderline
ORGLA05G0143400.1 Alkaloid CYP80F1 medium borderline
ORGLA07G0244000.1 Alkaloid CYP80F1 medium borderline
ORGLA01G0072000.1 Alkaloid G8O/G8H medium borderline
ORGLA01G0161800.1 Alkaloid G8O/G8H medium borderline
ORGLA02G0006500.1 Alkaloid G8O/G8H medium borderline
ORGLA02G0059800.1 Alkaloid G8O/G8H medium borderline
ORGLA02G0182500.1 Alkaloid G8O/G8H medium borderline
ORGLA03G0007900.1 Alkaloid G8O/G8H medium borderline
ORGLA03G0025200.1 Alkaloid G8O/G8H medium borderline
ORGLA03G0102600.1 Alkaloid G8O/G8H medium borderline
ORGLA03G0235900.1 Alkaloid G8O/G8H medium borderline
ORGLA03G0260600.1 Alkaloid G8O/G8H low borderline
ORGLA03G0303800.1 Alkaloid G8O/G8H medium pass