PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Gene Pathway Family Confidence Status
ORGLA03G0101500.1 Rosmarinic Acid C4H medium pass
ORGLA03G0102600.1 Rosmarinic Acid C4H medium pass
ORGLA03G0174900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0219300.1 Rosmarinic Acid C4H low borderline
ORGLA03G0220200.1 Rosmarinic Acid C4H low borderline
ORGLA03G0230900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0231600.1 Rosmarinic Acid C4H low borderline
ORGLA03G0231700.1 Rosmarinic Acid C4H medium pass
ORGLA03G0232000.1 Rosmarinic Acid C4H medium pass
ORGLA03G0232100.1 Rosmarinic Acid C4H medium pass
ORGLA03G0235900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0303800.1 Rosmarinic Acid C4H low borderline
ORGLA03G0319800.1 Rosmarinic Acid C4H low borderline
ORGLA03G0319900.1 Rosmarinic Acid C4H low borderline
ORGLA03G0369400.1 Rosmarinic Acid C4H low borderline
ORGLA03G0378900.1 Rosmarinic Acid C4H medium pass
ORGLA03G0389200.1 Rosmarinic Acid C4H medium pass
ORGLA04G0000500.1 Rosmarinic Acid C4H medium pass
ORGLA04G0010700.1 Rosmarinic Acid C4H low borderline
ORGLA04G0018200.1 Rosmarinic Acid C4H low borderline
ORGLA04G0018800.1 Rosmarinic Acid C4H low borderline
ORGLA04G0020400.1 Rosmarinic Acid C4H low borderline
ORGLA04G0021400.1 Rosmarinic Acid C4H low borderline
ORGLA04G0040600.1 Rosmarinic Acid C4H low borderline
ORGLA04G0086300.1 Rosmarinic Acid C4H low borderline
ORGLA04G0126200.1 Rosmarinic Acid C4H low borderline
ORGLA04G0132700.1 Rosmarinic Acid C4H low borderline
ORGLA04G0132900.1 Rosmarinic Acid C4H low borderline
ORGLA04G0172900.1 Rosmarinic Acid C4H low borderline
ORGLA04G0194000.1 Rosmarinic Acid C4H low borderline
ORGLA04G0273100.1 Rosmarinic Acid C4H low borderline
ORGLA04G0273200.1 Rosmarinic Acid C4H medium pass
ORGLA05G0000900.1 Rosmarinic Acid C4H low borderline
ORGLA05G0048800.1 Rosmarinic Acid C4H low borderline
ORGLA05G0061200.1 Rosmarinic Acid C4H low borderline
ORGLA05G0099000.1 Rosmarinic Acid C4H medium pass
ORGLA05G0114500.1 Rosmarinic Acid C4H low borderline
ORGLA05G0120900.1 Rosmarinic Acid C4H low borderline
ORGLA05G0139300.1 Rosmarinic Acid C4H low borderline
ORGLA05G0139500.1 Rosmarinic Acid C4H low borderline
ORGLA05G0143300.1 Rosmarinic Acid C4H low borderline
ORGLA05G0147900.1 Rosmarinic Acid C4H medium pass
ORGLA05G0179700.1 Rosmarinic Acid C4H low borderline
ORGLA05G0185200.1 Rosmarinic Acid C4H medium pass
ORGLA05G0198800.1 Rosmarinic Acid C4H low borderline
ORGLA06G0000600.1 Rosmarinic Acid C4H low borderline
ORGLA06G0006400.1 Rosmarinic Acid C4H low borderline
ORGLA06G0018500.1 Rosmarinic Acid C4H low borderline
ORGLA06G0054200.1 Rosmarinic Acid C4H low borderline
ORGLA06G0054300.1 Rosmarinic Acid C4H low borderline