PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
ORGLA06G0096600.1 Rosmarinic Acid C4H low borderline
ORGLA06G0107100.1 Rosmarinic Acid C4H medium pass
ORGLA06G0117400.1 Rosmarinic Acid C4H medium pass
ORGLA06G0118900.1 Rosmarinic Acid C4H low borderline
ORGLA06G0126300.1 Rosmarinic Acid C4H low borderline
ORGLA06G0131500.1 Rosmarinic Acid C4H low borderline
ORGLA06G0133500.1 Rosmarinic Acid C4H medium pass
ORGLA06G0133700.1 Rosmarinic Acid C4H low borderline
ORGLA06G0147900.1 Rosmarinic Acid C4H low borderline
ORGLA06G0155600.1 Rosmarinic Acid C4H low borderline
ORGLA06G0157100.1 Rosmarinic Acid C4H low borderline
ORGLA06G0157300.1 Rosmarinic Acid C4H low borderline
ORGLA06G0157400.1 Rosmarinic Acid C4H low borderline
ORGLA06G0157500.1 Rosmarinic Acid C4H low borderline
ORGLA06G0166900.1 Rosmarinic Acid C4H low borderline
ORGLA06G0174600.1 Rosmarinic Acid C4H low borderline
ORGLA06G0180500.1 Rosmarinic Acid C4H low borderline
ORGLA06G0185800.1 Rosmarinic Acid C4H medium pass
ORGLA06G0185900.1 Rosmarinic Acid C4H medium pass
ORGLA06G0186000.1 Rosmarinic Acid C4H medium pass
ORGLA06G0186200.1 Rosmarinic Acid C4H medium pass
ORGLA06G0186300.1 Rosmarinic Acid C4H low borderline
ORGLA06G0186400.1 Rosmarinic Acid C4H medium pass
ORGLA06G0186500.1 Rosmarinic Acid C4H low borderline
ORGLA06G0186600.1 Rosmarinic Acid C4H low borderline
ORGLA06G0186700.1 Rosmarinic Acid C4H low borderline
ORGLA06G0186800.1 Rosmarinic Acid C4H low borderline
ORGLA06G0186900.1 Rosmarinic Acid C4H medium pass
ORGLA06G0205000.1 Rosmarinic Acid C4H low borderline
ORGLA06G0243000.1 Rosmarinic Acid C4H medium pass
ORGLA06G0254900.1 Rosmarinic Acid C4H low borderline
ORGLA06G0264200.1 Rosmarinic Acid C4H medium pass
ORGLA07G0062000.1 Rosmarinic Acid C4H medium pass
ORGLA07G0090700.1 Rosmarinic Acid C4H low borderline
ORGLA07G0099700.1 Rosmarinic Acid C4H low borderline
ORGLA07G0134900.1 Rosmarinic Acid C4H low borderline
ORGLA07G0135300.1 Rosmarinic Acid C4H low borderline
ORGLA07G0135400.1 Rosmarinic Acid C4H low borderline
ORGLA07G0135500.1 Rosmarinic Acid C4H low borderline
ORGLA07G0135700.1 Rosmarinic Acid C4H low borderline
ORGLA07G0187700.1 Rosmarinic Acid C4H low borderline
ORGLA07G0189200.1 Rosmarinic Acid C4H low borderline
ORGLA07G0208500.1 Rosmarinic Acid C4H low borderline
ORGLA07G0223900.1 Rosmarinic Acid C4H medium pass
ORGLA07G0230100.1 Rosmarinic Acid C4H low borderline
ORGLA07G0231800.1 Rosmarinic Acid C4H low borderline
ORGLA07G0264500.1 Rosmarinic Acid C4H low borderline
ORGLA08G0014600.1 Rosmarinic Acid C4H low borderline
ORGLA08G0024800.1 Rosmarinic Acid C4H medium pass
ORGLA08G0024900.1 Rosmarinic Acid C4H low borderline