PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA08G0057600.1 Rosmarinic Acid C4H medium pass
ORGLA08G0069700.1 Rosmarinic Acid C4H low borderline
ORGLA08G0104600.1 Rosmarinic Acid C4H low borderline
ORGLA08G0148800.1 Rosmarinic Acid C4H medium pass
ORGLA08G0153100.1 Rosmarinic Acid C4H medium pass
ORGLA08G0174900.1 Rosmarinic Acid C4H medium pass
ORGLA08G0175000.1 Rosmarinic Acid C4H low borderline
ORGLA08G0175200.1 Rosmarinic Acid C4H low borderline
ORGLA08G0175300.1 Rosmarinic Acid C4H medium pass
ORGLA08G0200200.1 Rosmarinic Acid C4H low borderline
ORGLA08G0217900.1 Rosmarinic Acid C4H medium pass
ORGLA08G0218500.1 Rosmarinic Acid C4H low borderline
ORGLA09G0023700.1 Rosmarinic Acid C4H medium pass
ORGLA09G0027800.1 Rosmarinic Acid C4H low borderline
ORGLA09G0062700.1 Rosmarinic Acid C4H low borderline
ORGLA09G0072200.1 Rosmarinic Acid C4H low borderline
ORGLA09G0088800.1 Rosmarinic Acid C4H medium pass
ORGLA09G0089000.1 Rosmarinic Acid C4H medium pass
ORGLA09G0089100.1 Rosmarinic Acid C4H medium pass
ORGLA09G0089200.1 Rosmarinic Acid C4H medium pass
ORGLA09G0091600.1 Rosmarinic Acid C4H medium pass
ORGLA09G0134300.1 Rosmarinic Acid C4H low borderline
ORGLA09G0135500.1 Rosmarinic Acid C4H low borderline
ORGLA09G0135600.1 Rosmarinic Acid C4H medium pass
ORGLA09G0168100.1 Rosmarinic Acid C4H medium pass
ORGLA09G0170600.1 Rosmarinic Acid C4H medium pass
ORGLA10G0016800.1 Rosmarinic Acid C4H low borderline
ORGLA10G0018600.1 Rosmarinic Acid C4H medium pass
ORGLA10G0027400.1 Rosmarinic Acid C4H low borderline
ORGLA10G0027600.1 Rosmarinic Acid C4H low borderline
ORGLA10G0027800.1 Rosmarinic Acid C4H medium pass
ORGLA10G0028200.1 Rosmarinic Acid C4H medium pass
ORGLA10G0030800.1 Rosmarinic Acid C4H low borderline
ORGLA10G0031000.1 Rosmarinic Acid C4H low borderline
ORGLA10G0031300.1 Rosmarinic Acid C4H low borderline
ORGLA10G0040100.1 Rosmarinic Acid C4H medium pass
ORGLA10G0045600.1 Rosmarinic Acid C4H low borderline
ORGLA10G0046200.1 Rosmarinic Acid C4H low borderline
ORGLA10G0057800.1 Rosmarinic Acid C4H low borderline
ORGLA10G0068200.1 Rosmarinic Acid C4H low borderline
ORGLA10G0079000.1 Rosmarinic Acid C4H low borderline
ORGLA10G0099900.1 Rosmarinic Acid C4H low borderline
ORGLA10G0100000.1 Rosmarinic Acid C4H low borderline
ORGLA10G0100100.1 Rosmarinic Acid C4H medium pass
ORGLA10G0161500.1 Rosmarinic Acid C4H low borderline
ORGLA11G0024300.1 Rosmarinic Acid C4H low borderline
ORGLA11G0111200.1 Rosmarinic Acid C4H low borderline
ORGLA11G0111900.1 Rosmarinic Acid C4H medium pass
ORGLA11G0112000.1 Rosmarinic Acid C4H low borderline
ORGLA11G0117100.1 Rosmarinic Acid C4H low borderline