PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA11G0169700.1 Rosmarinic Acid C4H low borderline
ORGLA11G0199500.1 Rosmarinic Acid C4H low borderline
ORGLA11G0211200.1 Rosmarinic Acid C4H low borderline
ORGLA11G0222700.1 Rosmarinic Acid C4H medium pass
ORGLA11G0223000.1 Rosmarinic Acid C4H low borderline
ORGLA12G0008800.1 Rosmarinic Acid C4H low borderline
ORGLA12G0022400.1 Rosmarinic Acid C4H low borderline
ORGLA12G0054500.1 Rosmarinic Acid C4H low borderline
ORGLA12G0076100.1 Rosmarinic Acid C4H medium pass
ORGLA12G0119600.1 Rosmarinic Acid C4H low borderline
ORGLA12G0175900.1 Rosmarinic Acid C4H low borderline
ORGLA12G0200600.1 Rosmarinic Acid C4H medium pass
ORGLA12G0201000.1 Rosmarinic Acid C4H medium pass
ORGLA01G0245500.1 Rosmarinic Acid CPR low borderline
ORGLA02G0002900.1 Rosmarinic Acid CPR low borderline
ORGLA04G0240700.1 Rosmarinic Acid CPR medium pass
ORGLA05G0109100.1 Rosmarinic Acid CPR medium pass
ORGLA08G0064300.1 Rosmarinic Acid CPR medium pass
ORGLA08G0222800.1 Rosmarinic Acid CPR low borderline
ORGLA09G0156400.1 Rosmarinic Acid CPR medium pass
ORGLA12G0168800.1 Rosmarinic Acid CPR low borderline
ORGLA01G0072900.1 Rosmarinic Acid HPPR medium pass
ORGLA04G0003300.1 Rosmarinic Acid HPPR medium pass
ORGLA04G0003500.1 Rosmarinic Acid HPPR medium pass
ORGLA04G0003600.1 Rosmarinic Acid HPPR medium pass
ORGLA04G0003700.1 Rosmarinic Acid HPPR medium pass
ORGLA02G0214200.1 Rosmarinic Acid PAL high pass
ORGLA02G0214300.1 Rosmarinic Acid PAL high pass
ORGLA02G0214400.1 Rosmarinic Acid PAL high pass
ORGLA02G0214500.1 Rosmarinic Acid PAL high pass
ORGLA04G0159500.1 Rosmarinic Acid PAL high pass
ORGLA04G0159700.1 Rosmarinic Acid PAL high pass
ORGLA05G0149600.1 Rosmarinic Acid PAL high pass
ORGLA12G0122600.1 Rosmarinic Acid PAL high pass
ORGLA01G0003100.1 Rosmarinic Acid RAS medium pass
ORGLA01G0047500.1 Rosmarinic Acid RAS low borderline
ORGLA01G0051800.1 Rosmarinic Acid RAS low borderline
ORGLA01G0102900.1 Rosmarinic Acid RAS low borderline
ORGLA01G0121100.1 Rosmarinic Acid RAS medium pass
ORGLA01G0182300.1 Rosmarinic Acid RAS low borderline
ORGLA02G0014400.1 Rosmarinic Acid RAS low borderline
ORGLA02G0122600.1 Rosmarinic Acid RAS low borderline
ORGLA02G0206100.1 Rosmarinic Acid RAS medium pass
ORGLA02G0338100.1 Rosmarinic Acid RAS low borderline
ORGLA02G0359700.1 Rosmarinic Acid RAS low borderline
ORGLA04G0018500.1 Rosmarinic Acid RAS low borderline
ORGLA04G0147900.1 Rosmarinic Acid RAS medium pass
ORGLA04G0212400.1 Rosmarinic Acid RAS low borderline
ORGLA05G0047800.1 Rosmarinic Acid RAS low borderline
ORGLA05G0197900.1 Rosmarinic Acid RAS low borderline