PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0050600.1 Rosmarinic Acid RAS medium pass
ORGLA06G0050800.1 Rosmarinic Acid RAS medium pass
ORGLA06G0227600.1 Rosmarinic Acid RAS medium pass
ORGLA08G0052600.1 Rosmarinic Acid RAS medium pass
ORGLA08G0221600.1 Rosmarinic Acid RAS medium pass
ORGLA08G0221700.1 Rosmarinic Acid RAS low borderline
ORGLA09G0078800.1 Rosmarinic Acid RAS medium pass
ORGLA10G0002800.1 Rosmarinic Acid RAS low borderline
ORGLA10G0003000.1 Rosmarinic Acid RAS low borderline
ORGLA10G0008500.1 Rosmarinic Acid RAS medium pass
ORGLA10G0008600.1 Rosmarinic Acid RAS low borderline
ORGLA10G0069200.1 Rosmarinic Acid RAS low borderline
ORGLA10G0069300.1 Rosmarinic Acid RAS low borderline
ORGLA10G0069400.1 Rosmarinic Acid RAS low borderline
ORGLA11G0048500.1 Rosmarinic Acid RAS medium pass
ORGLA11G0124800.1 Rosmarinic Acid RAS medium pass
ORGLA11G0173100.1 Rosmarinic Acid RAS low borderline
ORGLA11G0173500.1 Rosmarinic Acid RAS low borderline
ORGLA11G0213200.1 Rosmarinic Acid RAS medium pass
ORGLA01G0046600.1 Rosmarinic Acid TAT medium pass
ORGLA02G0119100.1 Rosmarinic Acid TAT medium pass
ORGLA02G0119300.1 Rosmarinic Acid TAT medium pass
ORGLA02G0120700.1 Rosmarinic Acid TAT medium pass
ORGLA04G0248800.1 Rosmarinic Acid TAT low borderline
ORGLA06G0050400.1 Rosmarinic Acid TAT low borderline
ORGLA06G0124800.1 Rosmarinic Acid TAT medium pass
ORGLA06G0164700.1 Rosmarinic Acid TAT low borderline
ORGLA10G0160700.1 Rosmarinic Acid TAT low borderline
ORGLA11G0141400.1 Rosmarinic Acid TAT medium pass