PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
ORGLA12G0019200.1 Steroid BR6OX2/CYP85A2 low borderline
ORGLA12G0109800.1 Steroid BR6OX2/CYP85A2 low borderline
ORGLA12G0175900.1 Steroid BR6OX2/CYP85A2 low borderline
ORGLA12G0182500.1 Steroid BR6OX2/CYP85A2 low borderline
ORGLA01G0287500.1 Steroid CAS medium pass
ORGLA01G0396800.1 Steroid CAS medium pass
ORGLA02G0030700.1 Steroid CAS medium pass
ORGLA02G0030900.1 Steroid CAS medium pass
ORGLA02G0031200.1 Steroid CAS medium pass
ORGLA02G0031400.1 Steroid CAS medium pass
ORGLA02G0082100.1 Steroid CAS medium pass
ORGLA02G0183400.1 Steroid CAS medium pass
ORGLA03G0164800.1 Steroid CAS low borderline
ORGLA03G0172100.1 Steroid CAS low borderline
ORGLA03G0311300.1 Steroid CAS medium pass
ORGLA04G0017100.1 Steroid CAS medium pass
ORGLA04G0020300.1 Steroid CAS medium pass
ORGLA04G0021100.1 Steroid CAS medium pass
ORGLA04G0060900.1 Steroid CAS low borderline
ORGLA04G0061100.1 Steroid CAS low borderline
ORGLA04G0062100.1 Steroid CAS low borderline
ORGLA04G0220500.1 Steroid CAS medium pass
ORGLA05G0071700.1 Steroid CAS medium pass
ORGLA06G0032900.1 Steroid CAS medium pass
ORGLA06G0033000.1 Steroid CAS medium pass
ORGLA06G0155100.1 Steroid CAS medium pass
ORGLA06G0155200.1 Steroid CAS medium pass
ORGLA06G0155300.1 Steroid CAS medium pass
ORGLA08G0056300.1 Steroid CAS medium pass
ORGLA09G0038000.1 Steroid CAS medium pass
ORGLA11G0086900.1 Steroid CAS medium pass
ORGLA11G0087300.1 Steroid CAS medium pass
ORGLA11G0087500.1 Steroid CAS medium pass
ORGLA11G0087700.1 Steroid CAS medium pass
ORGLA11G0113600.1 Steroid CAS low borderline
ORGLA11G0143700.1 Steroid CAS medium pass
ORGLA11G0203500.1 Steroid CAS medium pass
ORGLA12G0113400.1 Steroid CAS medium pass
ORGLA12G0167000.1 Steroid CAS medium pass
ORGLA01G0050400.1 Steroid CPD/CYP90A1 low borderline
ORGLA01G0281800.1 Steroid CPD/CYP90A1 low borderline
ORGLA01G0282000.1 Steroid CPD/CYP90A1 low borderline
ORGLA01G0282300.1 Steroid CPD/CYP90A1 low borderline
ORGLA01G0379100.1 Steroid CPD/CYP90A1 low borderline
ORGLA03G0086200.1 Steroid CPD/CYP90A1 low borderline
ORGLA03G0220200.1 Steroid CPD/CYP90A1 medium borderline
ORGLA03G0260700.1 Steroid CPD/CYP90A1 medium pass
ORGLA05G0099000.1 Steroid CPD/CYP90A1 medium borderline
ORGLA06G0107100.1 Steroid CPD/CYP90A1 medium borderline
ORGLA06G0243000.1 Steroid CPD/CYP90A1 medium borderline