PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
ORGLA07G0135300.1 Steroid CPD/CYP90A1 medium borderline
ORGLA08G0217900.1 Steroid CPD/CYP90A1 medium borderline
ORGLA10G0028200.1 Steroid CPD/CYP90A1 medium borderline
ORGLA10G0028500.1 Steroid CPD/CYP90A1 low borderline
ORGLA10G0126500.1 Steroid CPD/CYP90A1 medium borderline
ORGLA11G0116100.1 Steroid CPD/CYP90A1 low borderline
ORGLA12G0109900.1 Steroid CPD/CYP90A1 low borderline
ORGLA12G0110000.1 Steroid CPD/CYP90A1 low borderline
ORGLA12G0116700.1 Steroid CPD/CYP90A1 low borderline
ORGLA11G0206800.1 Steroid CPI1 high pass
ORGLA01G0072000.1 Steroid CYP51G1 medium borderline
ORGLA01G0072200.1 Steroid CYP51G1 medium borderline
ORGLA01G0131600.1 Steroid CYP51G1 medium borderline
ORGLA01G0382000.1 Steroid CYP51G1 medium borderline
ORGLA01G0386400.1 Steroid CYP51G1 low borderline
ORGLA02G0008800.1 Steroid CYP51G1 medium borderline
ORGLA02G0059500.1 Steroid CYP51G1 medium borderline
ORGLA02G0059600.1 Steroid CYP51G1 medium borderline
ORGLA02G0059900.1 Steroid CYP51G1 medium borderline
ORGLA02G0126400.1 Steroid CYP51G1 medium borderline
ORGLA02G0198400.1 Steroid CYP51G1 medium borderline
ORGLA02G0361000.1 Steroid CYP51G1 medium borderline
ORGLA05G0061200.1 Steroid CYP51G1 medium borderline
ORGLA05G0114500.1 Steroid CYP51G1 medium borderline
ORGLA05G0143300.1 Steroid CYP51G1 medium borderline
ORGLA05G0143400.1 Steroid CYP51G1 medium borderline
ORGLA05G0198800.1 Steroid CYP51G1 medium borderline
ORGLA06G0096600.1 Steroid CYP51G1 medium borderline
ORGLA06G0186200.1 Steroid CYP51G1 medium borderline
ORGLA06G0186400.1 Steroid CYP51G1 medium borderline
ORGLA06G0186600.1 Steroid CYP51G1 medium borderline
ORGLA06G0186900.1 Steroid CYP51G1 medium borderline
ORGLA07G0142900.1 Steroid CYP51G1 low borderline
ORGLA07G0244000.1 Steroid CYP51G1 medium borderline
ORGLA11G0129900.1 Steroid CYP51G1 medium borderline
ORGLA01G0134000.1 Steroid CYP90D1 low borderline
ORGLA01G0189800.1 Steroid CYP90D1 low borderline
ORGLA03G0007900.1 Steroid CYP90D1 low borderline
ORGLA03G0102600.1 Steroid CYP90D1 low borderline
ORGLA03G0235500.1 Steroid CYP90D1 medium borderline
ORGLA03G0378900.1 Steroid CYP90D1 low borderline
ORGLA04G0010700.1 Steroid CYP90D1 low borderline
ORGLA04G0126200.1 Steroid CYP90D1 medium borderline
ORGLA04G0191500.1 Steroid CYP90D1 medium borderline
ORGLA05G0139300.1 Steroid CYP90D1 low borderline
ORGLA06G0264200.1 Steroid CYP90D1 low borderline
ORGLA07G0134900.1 Steroid CYP90D1 medium borderline
ORGLA07G0135000.1 Steroid CYP90D1 medium borderline
ORGLA07G0135600.1 Steroid CYP90D1 medium borderline
ORGLA07G0135700.1 Steroid CYP90D1 medium pass