PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
ORGLA07G0135800.1 Steroid CYP90D1 medium borderline
ORGLA07G0189200.1 Steroid CYP90D1 low borderline
ORGLA07G0208500.1 Steroid CYP90D1 low borderline
ORGLA07G0223900.1 Steroid CYP90D1 low borderline
ORGLA07G0230100.1 Steroid CYP90D1 low borderline
ORGLA09G0062700.1 Steroid CYP90D1 low borderline
ORGLA09G0134300.1 Steroid CYP90D1 low borderline
ORGLA10G0030800.1 Steroid CYP90D1 low borderline
ORGLA10G0057800.1 Steroid CYP90D1 low borderline
ORGLA10G0068200.1 Steroid CYP90D1 medium borderline
ORGLA11G0024300.1 Steroid CYP90D1 medium borderline
ORGLA11G0199500.1 Steroid CYP90D1 low borderline
ORGLA12G0022400.1 Steroid CYP90D1 medium borderline
ORGLA01G0027700.1 Steroid DET2 low borderline
ORGLA01G0313100.1 Steroid DET2 medium pass
ORGLA11G0049400.1 Steroid DET2 medium pass
ORGLA03G0233500.1 Steroid DWF1 low borderline
ORGLA07G0202300.1 Steroid DWF1 low borderline
ORGLA10G0076500.1 Steroid DWF1 medium pass
ORGLA01G0121000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0173800.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189500.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0189900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0190000.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0229400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0281700.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0282200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0317200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0379200.1 Steroid DWF4/CYP90B1 low borderline
ORGLA01G0381900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0059300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0060100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0060600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0075200.1 Steroid DWF4/CYP90B1 medium borderline
ORGLA02G0326100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA02G0331300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029300.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0029600.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0101400.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0174900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0177900.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0178100.1 Steroid DWF4/CYP90B1 low borderline
ORGLA03G0219300.1 Steroid DWF4/CYP90B1 low borderline