PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0091600.1 Flavonoid F3H medium borderline
ORGLA06G0158700.1 Flavonoid F3H medium borderline
ORGLA07G0002700.1 Flavonoid F3H low borderline
ORGLA07G0037600.1 Flavonoid F3H low borderline
ORGLA07G0037700.1 Flavonoid F3H medium pass
ORGLA08G0118100.1 Flavonoid F3H medium borderline
ORGLA08G0118400.1 Flavonoid F3H medium borderline
ORGLA08G0118500.1 Flavonoid F3H medium pass
ORGLA08G0158400.1 Flavonoid F3H medium borderline
ORGLA08G0190200.1 Flavonoid F3H medium borderline
ORGLA08G0195800.1 Flavonoid F3H medium borderline
ORGLA08G0196000.1 Flavonoid F3H medium borderline
ORGLA09G0016500.1 Flavonoid F3H low borderline
ORGLA09G0018000.1 Flavonoid F3H low borderline
ORGLA09G0051100.1 Flavonoid F3H medium borderline
ORGLA09G0051200.1 Flavonoid F3H medium borderline
ORGLA09G0165600.1 Flavonoid F3H medium borderline
ORGLA10G0117400.1 Flavonoid F3H low borderline
ORGLA10G0117500.1 Flavonoid F3H low borderline
ORGLA10G0119300.1 Flavonoid F3H medium borderline
ORGLA10G0134200.1 Flavonoid F3H medium borderline
ORGLA10G0134300.1 Flavonoid F3H medium borderline
ORGLA10G0134500.1 Flavonoid F3H medium borderline
ORGLA10G0134600.1 Flavonoid F3H medium borderline
ORGLA10G0134800.1 Flavonoid F3H medium borderline
ORGLA10G0134900.1 Flavonoid F3H medium borderline
ORGLA10G0135200.1 Flavonoid F3H medium borderline
ORGLA11G0081300.1 Flavonoid F3H low borderline
ORGLA11G0104100.1 Flavonoid F3H medium borderline
ORGLA11G0198300.1 Flavonoid F3H medium borderline
ORGLA01G0153100.1 Flavonoid FLS medium borderline
ORGLA06G0046200.1 Flavonoid FLS medium pass
ORGLA06G0198200.1 Flavonoid FLS low borderline
ORGLA08G0066800.1 Flavonoid FLS medium borderline
ORGLA01G0121200.1 Flavonoid FNS medium borderline
ORGLA01G0379200.1 Flavonoid FNS medium borderline
ORGLA02G0007400.1 Flavonoid FNS low borderline
ORGLA02G0059800.1 Flavonoid FNS medium borderline
ORGLA02G0082000.1 Flavonoid FNS medium borderline
ORGLA02G0126400.1 Flavonoid FNS medium borderline
ORGLA02G0238500.1 Flavonoid FNS medium borderline
ORGLA03G0231000.1 Flavonoid FNS medium borderline
ORGLA03G0235500.1 Flavonoid FNS medium borderline
ORGLA03G0235900.1 Flavonoid FNS medium borderline
ORGLA03G0369400.1 Flavonoid FNS medium borderline
ORGLA04G0010700.1 Flavonoid FNS medium borderline
ORGLA04G0172900.1 Flavonoid FNS medium borderline
ORGLA05G0048800.1 Flavonoid FNS medium borderline
ORGLA05G0114500.1 Flavonoid FNS medium borderline
ORGLA05G0143300.1 Flavonoid FNS medium borderline