PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0155600.1 Flavonoid FNS medium borderline
ORGLA06G0157100.1 Flavonoid FNS medium borderline
ORGLA06G0157500.1 Flavonoid FNS medium borderline
ORGLA06G0186800.1 Flavonoid FNS medium borderline
ORGLA07G0135800.1 Flavonoid FNS medium borderline
ORGLA07G0244000.1 Flavonoid FNS medium borderline
ORGLA08G0218500.1 Flavonoid FNS medium borderline
ORGLA09G0054600.1 Flavonoid FNS low borderline
ORGLA09G0135500.1 Flavonoid FNS medium borderline
ORGLA10G0030900.1 Flavonoid FNS medium pass
ORGLA11G0112000.1 Flavonoid FNS medium borderline
ORGLA11G0117100.1 Flavonoid FNS medium borderline
ORGLA11G0129900.1 Flavonoid FNS medium borderline
ORGLA12G0054500.1 Flavonoid FNS medium borderline
ORGLA12G0175900.1 Flavonoid FNS medium borderline
ORGLA01G0003600.1 Flavonoid IFR high pass
ORGLA01G0003700.1 Flavonoid IFR high pass
ORGLA01G0109200.1 Flavonoid IFR low borderline
ORGLA01G0303300.1 Flavonoid IFR low borderline
ORGLA02G0029200.1 Flavonoid IFR low borderline
ORGLA02G0089100.1 Flavonoid IFR low borderline
ORGLA02G0175900.1 Flavonoid IFR low borderline
ORGLA02G0252500.1 Flavonoid IFR high pass
ORGLA02G0325100.1 Flavonoid IFR low borderline
ORGLA02G0332300.1 Flavonoid IFR low borderline
ORGLA02G0359800.1 Flavonoid IFR low borderline
ORGLA03G0108300.1 Flavonoid IFR high pass
ORGLA03G0123000.1 Flavonoid IFR low borderline
ORGLA03G0165700.1 Flavonoid IFR medium pass
ORGLA03G0168400.1 Flavonoid IFR low borderline
ORGLA03G0359900.1 Flavonoid IFR low borderline
ORGLA04G0083400.1 Flavonoid IFR low borderline
ORGLA05G0007800.1 Flavonoid IFR low borderline
ORGLA05G0115700.1 Flavonoid IFR low borderline
ORGLA06G0128800.1 Flavonoid IFR low borderline
ORGLA06G0223400.1 Flavonoid IFR low borderline
ORGLA06G0281700.1 Flavonoid IFR high pass
ORGLA06G0282200.1 Flavonoid IFR high pass
ORGLA07G0060400.1 Flavonoid IFR low borderline
ORGLA07G0204300.1 Flavonoid IFR low borderline
ORGLA08G0212800.1 Flavonoid IFR medium pass
ORGLA10G0000200.1 Flavonoid IFR low borderline
ORGLA10G0087300.1 Flavonoid IFR low borderline
ORGLA12G0074600.1 Flavonoid IFR high pass
ORGLA12G0074700.1 Flavonoid IFR low borderline
ORGLA12G0074900.1 Flavonoid IFR medium pass
ORGLA12G0075200.1 Flavonoid IFR high pass
ORGLA12G0092900.1 Flavonoid IFR low borderline
ORGLA01G0050300.1 Flavonoid IFS low borderline
ORGLA01G0058700.1 Flavonoid IFS low borderline