PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.32% Alkaloid pathway 19.93% Phenylpropanoid pathway 19.31% Flavonoid pathway 16.11% Rosmarinic acid pathway 9.04% Steroid pathway 5.29%
Family Distribution
C4H 6.56% C3'H/CYP98A 6.22% BAHD 5.86% UGT 4.89% 7DLGT 4.38% POD 4.24% UFGT 4.21% T3O 3.85%
Other Families 59.79%
More Families (97)
CYP76 147 3.56% IFS 144 3.49% 4CL 141 3.41% F3'H/CYP75B 104 2.52% BR6OX2/CYP85A2 101 2.44% NMT 90 2.18% DWF4/CYP90B1 86 2.08% CYP71 75 1.82% F3H 73 1.77% STR 71 1.72% SMT1/SMT2/SMT3 52 1.26% PYKS 51 1.23% TPS 49 1.19% CAD 48 1.16% GES 44 1.07% G8O/G8H 44 1.07% CAS 43 1.04% LAC 41 0.99% RAS 41 0.99% SGD 38 0.92% CSE 38 0.92% H6H 37 0.9% CODM/T6ODM 37 0.9% HCT 37 0.9% T16H 35 0.85% FNS 34 0.82% PMT 32 0.77% IFR 32 0.77% SLS 31 0.75% CCR 31 0.75% TRI/TRII 29 0.7% ANR 28 0.68% CYP90D1 28 0.68% CHS 27 0.65% IO 26 0.63% COMT 26 0.63% F5H/CYP84A 25 0.61% CYP51G1 25 0.61% GS 23 0.56% BR6OX1/CYP85A1 23 0.56% NCS 21 0.51% 16OMT 21 0.51% PAL 21 0.51% CPD/CYP90A1 21 0.51% F3'5'H/CYP75A 20 0.48% DFR 15 0.36% COR 14 0.34% BBE 13 0.31% CPR 13 0.31% 8HGO 12 0.29% CNMT 11 0.27% TAT 11 0.27% CYP80B1 10 0.24% LAMT 9 0.22% 7DLH 9 0.22% MPO 8 0.19% ANS/LDOX 8 0.19% SQS/FDFT1 8 0.19% SQE 8 0.19% FPPS 8 0.19% HPPR 7 0.17% GGPPS 7 0.17% ROT3/CYP90C1 6 0.15% MVK 6 0.15% AACT 6 0.15% TYDC_DDC 5 0.12% CCoAOMT 5 0.12% 6OMT_4OMT_SOMT 4 0.1% CYP719 4 0.1% CHI 4 0.1% SMO1/SMO2 4 0.1% HMGS 4 0.1% MVD 4 0.1% HMGR 4 0.1% ISY 3 0.07% TDC 3 0.07% CYP80F1 3 0.07% FLS 3 0.07% DET2 3 0.07% HYD1 3 0.07% DWF1 3 0.07% DXS 3 0.07% MCT/IspD 3 0.07% MDS/IspF 3 0.07% ODC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% FK 2 0.05% DWF5 2 0.05% HDR/IspH 2 0.05% PMK 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% CPI1 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
Reset
Gene Pathway Family Confidence Status Best Target
Orhiscaffold11580016800.1 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Orhiscaffold13720035850.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Orhiscaffold15300048390.1 Rosmarinic Acid CPR low borderline CPR__00008__sp_Q9SB48_NCPR1_ARATH
Orhiscaffold19320076690.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Orhiscaffold19320076710.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Orhiscaffold21400091460.1 Rosmarinic Acid CPR medium pass CPR__00004__sp_Q0J705_NCPR2_ORYSJ
Orhiscaffold22070095690.1 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
Orhiscaffold23530104810.1 Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
Orhiscaffold32320151870.1 Rosmarinic Acid CPR low borderline CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Orhiscaffold56970240230.1 Rosmarinic Acid CPR low borderline CPR__00008__sp_Q9SB48_NCPR1_ARATH
Orhiscaffold57140240730.1 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Orhiscaffold5750241610.1 Rosmarinic Acid CPR medium pass CPR__00005__sp_Q653S9_NCPR3_ORYSJ
Orhiscaffold8000293790.1 Rosmarinic Acid CPR low borderline CPR__00005__sp_Q653S9_NCPR3_ORYSJ