PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.32% Alkaloid pathway 19.93% Phenylpropanoid pathway 19.31% Flavonoid pathway 16.11% Rosmarinic acid pathway 9.04% Steroid pathway 5.29%
Family Distribution
C4H 6.56% C3'H/CYP98A 6.22% BAHD 5.86% UGT 4.89% 7DLGT 4.38% POD 4.24% UFGT 4.21% T3O 3.85%
Other Families 59.79%
More Families (97)
CYP76 147 3.56% IFS 144 3.49% 4CL 141 3.41% F3'H/CYP75B 104 2.52% BR6OX2/CYP85A2 101 2.44% NMT 90 2.18% DWF4/CYP90B1 86 2.08% CYP71 75 1.82% F3H 73 1.77% STR 71 1.72% SMT1/SMT2/SMT3 52 1.26% PYKS 51 1.23% TPS 49 1.19% CAD 48 1.16% GES 44 1.07% G8O/G8H 44 1.07% CAS 43 1.04% LAC 41 0.99% RAS 41 0.99% SGD 38 0.92% CSE 38 0.92% H6H 37 0.9% CODM/T6ODM 37 0.9% HCT 37 0.9% T16H 35 0.85% FNS 34 0.82% PMT 32 0.77% IFR 32 0.77% SLS 31 0.75% CCR 31 0.75% TRI/TRII 29 0.7% ANR 28 0.68% CYP90D1 28 0.68% CHS 27 0.65% IO 26 0.63% COMT 26 0.63% F5H/CYP84A 25 0.61% CYP51G1 25 0.61% GS 23 0.56% BR6OX1/CYP85A1 23 0.56% NCS 21 0.51% 16OMT 21 0.51% PAL 21 0.51% CPD/CYP90A1 21 0.51% F3'5'H/CYP75A 20 0.48% DFR 15 0.36% COR 14 0.34% BBE 13 0.31% CPR 13 0.31% 8HGO 12 0.29% CNMT 11 0.27% TAT 11 0.27% CYP80B1 10 0.24% LAMT 9 0.22% 7DLH 9 0.22% MPO 8 0.19% ANS/LDOX 8 0.19% SQS/FDFT1 8 0.19% SQE 8 0.19% FPPS 8 0.19% HPPR 7 0.17% GGPPS 7 0.17% ROT3/CYP90C1 6 0.15% MVK 6 0.15% AACT 6 0.15% TYDC_DDC 5 0.12% CCoAOMT 5 0.12% 6OMT_4OMT_SOMT 4 0.1% CYP719 4 0.1% CHI 4 0.1% SMO1/SMO2 4 0.1% HMGS 4 0.1% MVD 4 0.1% HMGR 4 0.1% ISY 3 0.07% TDC 3 0.07% CYP80F1 3 0.07% FLS 3 0.07% DET2 3 0.07% HYD1 3 0.07% DWF1 3 0.07% DXS 3 0.07% MCT/IspD 3 0.07% MDS/IspF 3 0.07% ODC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% FK 2 0.05% DWF5 2 0.05% HDR/IspH 2 0.05% PMK 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% CPI1 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status Best Target
Orhiscaffold1100011730.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold11830019440.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold1220022450.1 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold13510034060.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold27650127990.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold30700143860.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold3440161600.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold370172910.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold370172920.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold43490198260.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold6160252160.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold670266200.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold74800283270.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold78790290910.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Orhiscaffold9730318210.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH