PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Orhiscaffold102610003680.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold1170018280.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold1260025790.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold13530034180.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold13680035310.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold1460043120.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold18660072070.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold2030084230.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold21470091780.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold21650092900.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold22180096250.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold22270096900.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold23680105850.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold23780106620.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold24070107860.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold24080108000.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold2530115120.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold25840118100.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold27580127720.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold27710128360.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold2980138560.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold30220141510.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold310145430.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold3690172500.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold38000177070.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold38000177080.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold38150177630.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold39300182180.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold3990184380.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold4350198340.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold4780212940.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold5240228220.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold52650228660.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold54920234530.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold5630238510.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold5630238520.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold58410244160.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold58620244590.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold6260255360.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold6850270290.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold6890271340.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold69940273850.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold7090276000.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold7460282810.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold8170296750.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold8590302760.1 Rosmarinic Acid 4CL medium pass
Orhiscaffold9840319450.1 Rosmarinic Acid 4CL low borderline
Orhiscaffold10000000880.1 Rosmarinic Acid C4H low borderline
Orhiscaffold10150002340.1 Rosmarinic Acid C4H medium pass
Orhiscaffold10300004430.1 Rosmarinic Acid C4H low borderline