PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Orhiscaffold1020002840.1 Alkaloid H6H medium borderline
Orhiscaffold11540016520.1 Alkaloid H6H low borderline
Orhiscaffold12310023440.1 Alkaloid H6H low borderline
Orhiscaffold13630034870.1 Alkaloid H6H low borderline
Orhiscaffold1540048960.1 Alkaloid H6H low borderline
Orhiscaffold16110054510.1 Alkaloid H6H high pass
Orhiscaffold1890073640.1 Alkaloid H6H medium pass
Orhiscaffold19200075870.1 Alkaloid H6H low borderline
Orhiscaffold2310102170.1 Alkaloid H6H medium borderline
Orhiscaffold27100125200.1 Alkaloid H6H medium borderline
Orhiscaffold30410142410.1 Alkaloid H6H low borderline
Orhiscaffold31130146260.1 Alkaloid H6H medium borderline
Orhiscaffold31650148680.1 Alkaloid H6H low borderline
Orhiscaffold32020150230.1 Alkaloid H6H low borderline
Orhiscaffold35410166470.1 Alkaloid H6H medium borderline
Orhiscaffold42420194240.1 Alkaloid H6H medium borderline
Orhiscaffold43470198180.1 Alkaloid H6H low borderline
Orhiscaffold43470198190.1 Alkaloid H6H medium borderline
Orhiscaffold44220201200.1 Alkaloid H6H low borderline
Orhiscaffold44300201500.1 Alkaloid H6H low borderline
Orhiscaffold46680209330.1 Alkaloid H6H medium pass
Orhiscaffold47950213460.1 Alkaloid H6H low borderline
Orhiscaffold4840214950.1 Alkaloid H6H low borderline
Orhiscaffold51790226280.1 Alkaloid H6H low borderline
Orhiscaffold5380231770.1 Alkaloid H6H medium borderline
Orhiscaffold5710240690.1 Alkaloid H6H medium pass
Orhiscaffold59690247330.1 Alkaloid H6H low borderline
Orhiscaffold65230262120.1 Alkaloid H6H low borderline
Orhiscaffold65230262120.2 Alkaloid H6H low borderline
Orhiscaffold7070275600.1 Alkaloid H6H low borderline
Orhiscaffold71760277450.1 Alkaloid H6H low borderline
Orhiscaffold76330286070.1 Alkaloid H6H low borderline
Orhiscaffold76330286080.1 Alkaloid H6H high pass
Orhiscaffold77140287950.1 Alkaloid H6H medium pass
Orhiscaffold8440300580.1 Alkaloid H6H low borderline
Orhiscaffold8550302100.1 Alkaloid H6H medium borderline
Orhiscaffold9190311230.1 Alkaloid H6H medium borderline