PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Orhiscaffold12450024670.1 Alkaloid T16H low borderline
Orhiscaffold13030029480.1 Alkaloid T16H medium borderline
Orhiscaffold13380032810.1 Alkaloid T16H medium pass
Orhiscaffold14200040190.1 Alkaloid T16H medium borderline
Orhiscaffold14510042560.1 Alkaloid T16H medium borderline
Orhiscaffold14510042570.1 Alkaloid T16H medium borderline
Orhiscaffold18100068750.1 Alkaloid T16H low borderline
Orhiscaffold2050085550.1 Alkaloid T16H medium borderline
Orhiscaffold24940112890.1 Alkaloid T16H medium borderline
Orhiscaffold26130119900.1 Alkaloid T16H medium borderline
Orhiscaffold28890134020.1 Alkaloid T16H medium borderline
Orhiscaffold29090134980.1 Alkaloid T16H medium borderline
Orhiscaffold30190141280.1 Alkaloid T16H low borderline
Orhiscaffold3050142750.1 Alkaloid T16H medium borderline
Orhiscaffold3150147960.1 Alkaloid T16H medium borderline
Orhiscaffold3300155250.1 Alkaloid T16H medium borderline
Orhiscaffold3300155280.1 Alkaloid T16H medium borderline
Orhiscaffold3300155300.1 Alkaloid T16H medium borderline
Orhiscaffold33330156480.1 Alkaloid T16H medium borderline
Orhiscaffold33330156500.1 Alkaloid T16H medium borderline
Orhiscaffold34410161690.1 Alkaloid T16H medium borderline
Orhiscaffold37340174260.1 Alkaloid T16H medium pass
Orhiscaffold51610225850.1 Alkaloid T16H low borderline
Orhiscaffold51980226730.1 Alkaloid T16H low borderline
Orhiscaffold5820243550.1 Alkaloid T16H low borderline
Orhiscaffold62070253760.1 Alkaloid T16H low borderline
Orhiscaffold6420259270.1 Alkaloid T16H medium borderline
Orhiscaffold6470260510.1 Alkaloid T16H medium borderline
Orhiscaffold67010266320.1 Alkaloid T16H low borderline
Orhiscaffold70930276150.1 Alkaloid T16H medium borderline
Orhiscaffold76790286760.1 Alkaloid T16H medium borderline
Orhiscaffold79070291640.1 Alkaloid T16H low borderline
Orhiscaffold79960293210.1 Alkaloid T16H medium borderline
Orhiscaffold8100295710.1 Alkaloid T16H medium borderline
Orhiscaffold83680299430.1 Alkaloid T16H low borderline