PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
Orhiscaffold11250014280.1 Flavonoid FNS medium borderline
Orhiscaffold11360015000.1 Flavonoid FNS medium borderline
Orhiscaffold12290023200.1 Flavonoid FNS medium borderline
Orhiscaffold12560025530.1 Flavonoid FNS medium borderline
Orhiscaffold13770035940.1 Flavonoid FNS medium borderline
Orhiscaffold150045850.1 Flavonoid FNS medium borderline
Orhiscaffold17980067230.1 Flavonoid FNS medium borderline
Orhiscaffold18100068750.1 Flavonoid FNS low borderline
Orhiscaffold19210075990.1 Flavonoid FNS medium borderline
Orhiscaffold21930094640.1 Flavonoid FNS medium borderline
Orhiscaffold260119140.1 Flavonoid FNS low borderline
Orhiscaffold26130119900.1 Flavonoid FNS medium borderline
Orhiscaffold30880144530.1 Flavonoid FNS low borderline
Orhiscaffold3150147960.1 Flavonoid FNS medium borderline
Orhiscaffold3300155270.1 Flavonoid FNS medium borderline
Orhiscaffold3300155280.1 Flavonoid FNS medium borderline
Orhiscaffold33330156470.1 Flavonoid FNS medium borderline
Orhiscaffold37340174250.1 Flavonoid FNS medium borderline
Orhiscaffold54410233380.1 Flavonoid FNS medium borderline
Orhiscaffold54910234500.1 Flavonoid FNS medium borderline
Orhiscaffold5700240400.1 Flavonoid FNS medium borderline
Orhiscaffold580243010.1 Flavonoid FNS low borderline
Orhiscaffold6020248830.2 Flavonoid FNS medium borderline
Orhiscaffold62070253760.1 Flavonoid FNS medium borderline
Orhiscaffold63040256490.1 Flavonoid FNS low borderline
Orhiscaffold6420259270.1 Flavonoid FNS medium borderline
Orhiscaffold66320264290.1 Flavonoid FNS medium borderline
Orhiscaffold760285170.1 Flavonoid FNS medium borderline
Orhiscaffold76790286750.1 Flavonoid FNS medium pass
Orhiscaffold8100295650.1 Flavonoid FNS medium borderline
Orhiscaffold8100295710.1 Flavonoid FNS medium borderline
Orhiscaffold85120301650.1 Flavonoid FNS medium borderline
Orhiscaffold88340306130.1 Flavonoid FNS medium borderline
Orhiscaffold90740309800.1 Flavonoid FNS medium borderline