Oryza rhizomatis (oryza_rhizomatis)
Imported from atlas release summary for Oryza rhizomatis.
1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1626
Candidate Genes
C4H
6.56%
C3'H/CYP98A
6.22%
BAHD
5.86%
UGT
4.89%
7DLGT
4.38%
POD
4.24%
UFGT
4.21%
T3O
3.85%
Other Families
59.79%
More Families (97)
CYP76
147
3.56%
IFS
144
3.49%
4CL
141
3.41%
F3'H/CYP75B
104
2.52%
BR6OX2/CYP85A2
101
2.44%
NMT
90
2.18%
DWF4/CYP90B1
86
2.08%
CYP71
75
1.82%
F3H
73
1.77%
STR
71
1.72%
SMT1/SMT2/SMT3
52
1.26%
PYKS
51
1.23%
TPS
49
1.19%
CAD
48
1.16%
GES
44
1.07%
G8O/G8H
44
1.07%
CAS
43
1.04%
LAC
41
0.99%
RAS
41
0.99%
SGD
38
0.92%
CSE
38
0.92%
H6H
37
0.9%
CODM/T6ODM
37
0.9%
HCT
37
0.9%
T16H
35
0.85%
FNS
34
0.82%
PMT
32
0.77%
IFR
32
0.77%
SLS
31
0.75%
CCR
31
0.75%
TRI/TRII
29
0.7%
ANR
28
0.68%
CYP90D1
28
0.68%
CHS
27
0.65%
IO
26
0.63%
COMT
26
0.63%
F5H/CYP84A
25
0.61%
CYP51G1
25
0.61%
GS
23
0.56%
BR6OX1/CYP85A1
23
0.56%
NCS
21
0.51%
16OMT
21
0.51%
PAL
21
0.51%
CPD/CYP90A1
21
0.51%
F3'5'H/CYP75A
20
0.48%
DFR
15
0.36%
COR
14
0.34%
BBE
13
0.31%
CPR
13
0.31%
8HGO
12
0.29%
CNMT
11
0.27%
TAT
11
0.27%
CYP80B1
10
0.24%
LAMT
9
0.22%
7DLH
9
0.22%
MPO
8
0.19%
ANS/LDOX
8
0.19%
SQS/FDFT1
8
0.19%
SQE
8
0.19%
FPPS
8
0.19%
HPPR
7
0.17%
GGPPS
7
0.17%
ROT3/CYP90C1
6
0.15%
MVK
6
0.15%
AACT
6
0.15%
TYDC_DDC
5
0.12%
CCoAOMT
5
0.12%
6OMT_4OMT_SOMT
4
0.1%
CYP719
4
0.1%
CHI
4
0.1%
SMO1/SMO2
4
0.1%
HMGS
4
0.1%
MVD
4
0.1%
HMGR
4
0.1%
ISY
3
0.07%
TDC
3
0.07%
CYP80F1
3
0.07%
FLS
3
0.07%
DET2
3
0.07%
HYD1
3
0.07%
DWF1
3
0.07%
DXS
3
0.07%
MCT/IspD
3
0.07%
MDS/IspF
3
0.07%
ODC
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
FK
2
0.05%
DWF5
2
0.05%
HDR/IspH
2
0.05%
PMK
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
CPI1
1
0.02%
DWF7
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 493 | 19 | UGT (176) | View species results |
| Alkaloid pathway | 324 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 314 | 12 | POD (149) | View species results |
| Flavonoid pathway | 262 | 13 | UFGT (158) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (75) | View species results |
| Steroid pathway | 86 | 12 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1654 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 320 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Orhiscaffold50940223290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold5580237010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold5660239230.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold59390246620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold59990247960.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold60248030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold62790255710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold68320269930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold72700279190.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold7980292890.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold8050294470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold8260297710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold8260297720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold8270297810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold8330298940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Orhiscaffold8650303870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold9730318200.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold9730318220.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold9730318230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold9730318240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Orhiscaffold9770318560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |