PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Orhiscaffold18060068150.1 Flavonoid ANR low borderline
Orhiscaffold18920073920.1 Flavonoid ANR medium pass
Orhiscaffold2080087340.1 Flavonoid ANR low borderline
Orhiscaffold22130095960.1 Flavonoid ANR medium borderline
Orhiscaffold25090113980.1 Flavonoid ANR low borderline
Orhiscaffold26540122020.1 Flavonoid ANR medium pass
Orhiscaffold3030141860.1 Flavonoid ANR medium borderline
Orhiscaffold30510142910.1 Flavonoid ANR low borderline
Orhiscaffold3440161550.1 Flavonoid ANR medium pass
Orhiscaffold35470166770.1 Flavonoid ANR medium borderline
Orhiscaffold3730174180.1 Flavonoid ANR low borderline
Orhiscaffold3730174190.1 Flavonoid ANR medium borderline
Orhiscaffold40940188500.1 Flavonoid ANR medium pass
Orhiscaffold40940188510.1 Flavonoid ANR low borderline
Orhiscaffold430196140.1 Flavonoid ANR medium borderline
Orhiscaffold51030223620.1 Flavonoid ANR high pass
Orhiscaffold52750228840.1 Flavonoid ANR medium borderline
Orhiscaffold55670236610.1 Flavonoid ANR low borderline
Orhiscaffold59310246520.1 Flavonoid ANR medium borderline
Orhiscaffold5940246740.1 Flavonoid ANR low borderline
Orhiscaffold61870253010.1 Flavonoid ANR low borderline
Orhiscaffold6420259280.1 Flavonoid ANR medium borderline
Orhiscaffold64750260620.1 Flavonoid ANR low borderline
Orhiscaffold8030294130.1 Flavonoid ANR low borderline
Orhiscaffold9380314010.1 Flavonoid ANR medium borderline
Orhiscaffold19660078910.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold29320136220.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold47950213460.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold650261430.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold6730266890.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold7670286680.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold8440300580.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold9570316160.1 Flavonoid ANS/LDOX medium borderline
Orhiscaffold10630007900.2 Flavonoid C4H low borderline
Orhiscaffold12450024660.1 Flavonoid C4H medium borderline
Orhiscaffold13090030000.1 Flavonoid C4H low borderline
Orhiscaffold14510042560.1 Flavonoid C4H medium pass
Orhiscaffold20870087900.1 Flavonoid C4H medium borderline
Orhiscaffold36300170250.1 Flavonoid C4H medium borderline
Orhiscaffold7820290010.1 Flavonoid C4H medium borderline
Orhiscaffold79960293210.1 Flavonoid C4H low borderline
Orhiscaffold8140296340.1 Flavonoid C4H medium borderline
Orhiscaffold83680299440.1 Flavonoid C4H medium borderline
Orhiscaffold950315280.1 Flavonoid C4H low borderline
Orhiscaffold5040221820.1 Flavonoid CHI medium pass
Orhiscaffold6530262240.1 Flavonoid CHI low borderline
Orhiscaffold7780289030.1 Flavonoid CHI medium pass
Orhiscaffold9610316830.1 Flavonoid CHI medium pass
Orhiscaffold11280014390.1 Flavonoid CHS medium pass
Orhiscaffold11740018700.1 Flavonoid CHS medium pass