Oryza sativa.spMH63 (oryza_sativa_spmh63)
Imported from atlas release summary for Oryza sativa.spMH63.
2546
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2546
Candidate Genes
BAHD
6.75%
C3'H/CYP98A
5.38%
C4H
5.27%
POD
4.75%
UGT
3.73%
T3O
3.39%
IFS
3.39%
4CL
3.39%
Other Families
63.94%
More Families (98)
7DLGT
218
3.33%
UFGT
218
3.33%
CYP76
177
2.7%
NMT
172
2.63%
STR
151
2.31%
DWF4/CYP90B1
128
1.96%
F3'H/CYP75B
126
1.93%
SMT1/SMT2/SMT3
121
1.85%
BR6OX2/CYP85A2
121
1.85%
CAD
118
1.8%
F3H
117
1.79%
CAS
109
1.67%
TPS
105
1.6%
CYP71
103
1.57%
SGD
94
1.44%
GES
91
1.39%
IFR
89
1.36%
TRI/TRII
72
1.1%
CODM/T6ODM
68
1.04%
CSE
65
0.99%
PYKS
64
0.98%
ANR
62
0.95%
CYP90D1
61
0.93%
H6H
59
0.9%
CCR
58
0.89%
FNS
57
0.87%
RAS
54
0.83%
G8O/G8H
53
0.81%
LAC
53
0.81%
T16H
50
0.76%
HCT
50
0.76%
COMT
49
0.75%
PMT
47
0.72%
GS
44
0.67%
SLS
41
0.63%
CHS
39
0.6%
DFR
39
0.6%
16OMT
38
0.58%
F5H/CYP84A
38
0.58%
CPD/CYP90A1
38
0.58%
NCS
33
0.5%
PAL
33
0.5%
BR6OX1/CYP85A1
33
0.5%
IO
32
0.49%
COR
32
0.49%
F3'5'H/CYP75A
31
0.47%
CYP51G1
31
0.47%
8HGO
25
0.38%
CNMT
24
0.37%
FPPS
24
0.37%
BBE
22
0.34%
TAT
21
0.32%
ROT3/CYP90C1
21
0.32%
LAMT
20
0.31%
MVK
19
0.29%
MPO
17
0.26%
CPR
17
0.26%
GGPPS
17
0.26%
ANS/LDOX
16
0.24%
SQS/FDFT1
16
0.24%
AACT
15
0.23%
7DLH
13
0.2%
CHI
13
0.2%
TDC
12
0.18%
HPPR
12
0.18%
PMK
11
0.17%
XMT_MXMT_DXMT
10
0.15%
TYDC_DDC
9
0.14%
CYP719
9
0.14%
DXS
9
0.14%
CYP80B1
8
0.12%
CYP80F1
8
0.12%
CCoAOMT
8
0.12%
SMO1/SMO2
8
0.12%
MVD
8
0.12%
HMGR
8
0.12%
ADC
7
0.11%
DWF7
6
0.09%
FK
6
0.09%
FLS
5
0.08%
CMK/IspE
5
0.08%
MDS/IspF
5
0.08%
HMGS
5
0.08%
MCT/IspD
5
0.08%
DET2
4
0.06%
DWF5
4
0.06%
DWF1
4
0.06%
DXR
4
0.06%
ODC
3
0.05%
ISY
3
0.05%
CPI1
3
0.05%
HDR/IspH
3
0.05%
GPPS
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
HYD1
2
0.03%
IDI
2
0.03%
SQE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 762 | 20 | BAHD (305) | View species results |
| Alkaloid pathway | 596 | 20 | 7DLGT (86) | View species results |
| Phenylpropanoid pathway | 482 | 11 | POD (254) | View species results |
| Flavonoid pathway | 332 | 13 | UFGT (188) | View species results |
| Steroid pathway | 196 | 13 | CAS (80) | View species results |
| Rosmarinic acid pathway | 178 | 7 | C4H (80) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2263 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 546 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OsatMH6309G0003750.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OsatMH6309G0015300.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OsatMH6309G0028980.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OsatMH6309G0028980.2 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OsatMH6309G0028980.3 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OsatMH6309G0028980.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OsatMH6310G0027720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OsatMH6311G0013920.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0013920.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0013920.3 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0013920.4 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0013920.5 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0021920.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OsatMH6311G0021950.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OsatMH6311G0021950.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OsatMH6311G0021950.5 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OsatMH6311G0022000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OsatMH6311G0029670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OsatMH6311G0038870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6311G0038960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OsatMH6312G0011280.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| OsatMH6312G0012620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |