PlantSME Plant secondary metabolism enzyme database

Oryza sativa.spMH63 (oryza_sativa_spmh63)

Imported from atlas release summary for Oryza sativa.spMH63.

2546
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.93% Alkaloid pathway 23.41% Phenylpropanoid pathway 18.93% Flavonoid pathway 13.04% Steroid pathway 7.7% Rosmarinic acid pathway 6.99%
Family Distribution
BAHD 6.75% C3'H/CYP98A 5.38% C4H 5.27% POD 4.75% UGT 3.73% T3O 3.39% IFS 3.39% 4CL 3.39%
Other Families 63.94%
More Families (98)
7DLGT 218 3.33% UFGT 218 3.33% CYP76 177 2.7% NMT 172 2.63% STR 151 2.31% DWF4/CYP90B1 128 1.96% F3'H/CYP75B 126 1.93% SMT1/SMT2/SMT3 121 1.85% BR6OX2/CYP85A2 121 1.85% CAD 118 1.8% F3H 117 1.79% CAS 109 1.67% TPS 105 1.6% CYP71 103 1.57% SGD 94 1.44% GES 91 1.39% IFR 89 1.36% TRI/TRII 72 1.1% CODM/T6ODM 68 1.04% CSE 65 0.99% PYKS 64 0.98% ANR 62 0.95% CYP90D1 61 0.93% H6H 59 0.9% CCR 58 0.89% FNS 57 0.87% RAS 54 0.83% G8O/G8H 53 0.81% LAC 53 0.81% T16H 50 0.76% HCT 50 0.76% COMT 49 0.75% PMT 47 0.72% GS 44 0.67% SLS 41 0.63% CHS 39 0.6% DFR 39 0.6% 16OMT 38 0.58% F5H/CYP84A 38 0.58% CPD/CYP90A1 38 0.58% NCS 33 0.5% PAL 33 0.5% BR6OX1/CYP85A1 33 0.5% IO 32 0.49% COR 32 0.49% F3'5'H/CYP75A 31 0.47% CYP51G1 31 0.47% 8HGO 25 0.38% CNMT 24 0.37% FPPS 24 0.37% BBE 22 0.34% TAT 21 0.32% ROT3/CYP90C1 21 0.32% LAMT 20 0.31% MVK 19 0.29% MPO 17 0.26% CPR 17 0.26% GGPPS 17 0.26% ANS/LDOX 16 0.24% SQS/FDFT1 16 0.24% AACT 15 0.23% 7DLH 13 0.2% CHI 13 0.2% TDC 12 0.18% HPPR 12 0.18% PMK 11 0.17% XMT_MXMT_DXMT 10 0.15% TYDC_DDC 9 0.14% CYP719 9 0.14% DXS 9 0.14% CYP80B1 8 0.12% CYP80F1 8 0.12% CCoAOMT 8 0.12% SMO1/SMO2 8 0.12% MVD 8 0.12% HMGR 8 0.12% ADC 7 0.11% DWF7 6 0.09% FK 6 0.09% FLS 5 0.08% CMK/IspE 5 0.08% MDS/IspF 5 0.08% HMGS 5 0.08% MCT/IspD 5 0.08% DET2 4 0.06% DWF5 4 0.06% DWF1 4 0.06% DXR 4 0.06% ODC 3 0.05% ISY 3 0.05% CPI1 3 0.05% HDR/IspH 3 0.05% GPPS 3 0.05% 6OMT_4OMT_SOMT 2 0.03% HYD1 2 0.03% IDI 2 0.03% SQE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 762 20 BAHD (305) View species results
Alkaloid pathway 596 20 7DLGT (86) View species results
Phenylpropanoid pathway 482 11 POD (254) View species results
Flavonoid pathway 332 13 UFGT (188) View species results
Steroid pathway 196 13 CAS (80) View species results
Rosmarinic acid pathway 178 7 C4H (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 546 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: XMT_MXMT_DXMT
Reset
Gene Pathway Family Confidence Status Best Target
OsatMH6304G0053580.1 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR
OsatMH6304G0053590.2 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR
OsatMH6306G0012220.1 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI
OsatMH6306G0012290.3 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR
OsatMH6306G0012340.1 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00008__sp_Q8H0D3_DXMT2_COFAR
OsatMH6306G0012350.1 Alkaloid XMT_MXMT_DXMT low borderline XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR
OsatMH6306G0019480.1 Alkaloid XMT_MXMT_DXMT low borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
OsatMH6306G0019630.1 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
OsatMH6306G0019630.2 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
OsatMH6306G0019640.1 Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI