PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

5617
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Pvir06KG0030320.5 Alkaloid GS medium pass
Pvir06NG0001100.1 Alkaloid GS medium pass
Pvir06NG0001100.2 Alkaloid GS medium pass
Pvir06NG0001100.3 Alkaloid GS medium pass
Pvir06NG0009160.1 Alkaloid GS high pass
Pvir06NG0016010.1 Alkaloid GS low borderline
Pvir06NG0029150.1 Alkaloid GS medium pass
Pvir06NG0029150.2 Alkaloid GS medium pass
Pvir07KG0007050.1 Alkaloid GS high pass
Pvir07KG0008230.1 Alkaloid GS high pass
Pvir07KG0010330.1 Alkaloid GS low borderline
Pvir07KG0010500.1 Alkaloid GS low borderline
Pvir07KG0010510.1 Alkaloid GS low borderline
Pvir07KG0010510.2 Alkaloid GS low borderline
Pvir07KG0030460.1 Alkaloid GS high pass
Pvir07NG0006400.1 Alkaloid GS high pass
Pvir07NG0020330.1 Alkaloid GS low borderline
Pvir07NG0028610.1 Alkaloid GS high pass
Pvir08KG0028020.14 Alkaloid GS low borderline
Pvir09KG0018980.1 Alkaloid GS high pass
Pvir09KG0035770.1 Alkaloid GS low borderline
Pvir09KG0035770.2 Alkaloid GS low borderline
Pvir09KG0035770.3 Alkaloid GS low borderline
Pvir09KG0035770.4 Alkaloid GS low borderline
Pvir09KG0035770.5 Alkaloid GS low borderline
Pvir09KG0035770.6 Alkaloid GS low borderline
Pvir09KG0035770.7 Alkaloid GS low borderline
Pvir09KG0062920.4 Alkaloid GS low borderline
Pvir09KG0062970.1 Alkaloid GS low borderline
Pvir09NG0019110.1 Alkaloid GS high pass
Pvir09NG0034730.1 Alkaloid GS low borderline
Pvir09NG0034730.2 Alkaloid GS low borderline
Pvir09NG0034730.3 Alkaloid GS low borderline
Pvir09NG0034730.4 Alkaloid GS low borderline
Pvir09NG0034730.7 Alkaloid GS low borderline
Pvir09NG0034730.8 Alkaloid GS low borderline
Pvir09NG0063070.1 Alkaloid GS low borderline