PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

5617
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Pvir04NG0028950.2 Alkaloid H6H low borderline
Pvir05KG0003940.4 Alkaloid H6H low borderline
Pvir05KG0004330.1 Alkaloid H6H low borderline
Pvir05KG0037590.1 Alkaloid H6H low borderline
Pvir05KG0044030.1 Alkaloid H6H low borderline
Pvir05KG0047960.1 Alkaloid H6H high pass
Pvir05NG0021030.2 Alkaloid H6H low borderline
Pvir05NG0036760.1 Alkaloid H6H low borderline
Pvir05NG0037760.1 Alkaloid H6H medium borderline
Pvir05NG0043180.1 Alkaloid H6H low borderline
Pvir05NG0047250.4 Alkaloid H6H medium pass
Pvir05NG0047250.5 Alkaloid H6H medium pass
Pvir05NG0051430.1 Alkaloid H6H medium borderline
Pvir05NG0051430.3 Alkaloid H6H medium borderline
Pvir06KG0009510.1 Alkaloid H6H medium borderline
Pvir06KG0019580.1 Alkaloid H6H low borderline
Pvir06KG0019590.1 Alkaloid H6H low borderline
Pvir06KG0019590.2 Alkaloid H6H low borderline
Pvir06KG0019620.1 Alkaloid H6H low borderline
Pvir06KG0024190.1 Alkaloid H6H low borderline
Pvir06KG0024190.2 Alkaloid H6H low borderline
Pvir06KG0024190.3 Alkaloid H6H medium pass
Pvir06KG0031720.1 Alkaloid H6H medium borderline
Pvir06NG0006010.1 Alkaloid H6H low borderline
Pvir06NG0006040.1 Alkaloid H6H low borderline
Pvir06NG0006070.1 Alkaloid H6H low borderline
Pvir06NG0006070.2 Alkaloid H6H low borderline
Pvir06NG0008960.1 Alkaloid H6H medium borderline
Pvir06NG0017640.1 Alkaloid H6H low borderline
Pvir06NG0017640.2 Alkaloid H6H low borderline
Pvir06NG0017690.1 Alkaloid H6H low borderline
Pvir06NG0017720.1 Alkaloid H6H low borderline
Pvir06NG0022660.1 Alkaloid H6H medium pass
Pvir06NG0022880.1 Alkaloid H6H low borderline
Pvir06NG0030640.1 Alkaloid H6H medium borderline
Pvir06NG0030940.1 Alkaloid H6H medium borderline
Pvir06NG0030940.2 Alkaloid H6H medium borderline
Pvir07KG0003360.1 Alkaloid H6H low borderline
Pvir07KG0005650.1 Alkaloid H6H medium borderline
Pvir07KG0027720.1 Alkaloid H6H medium borderline
Pvir07KG0033120.1 Alkaloid H6H low borderline
Pvir07KG0033140.1 Alkaloid H6H low borderline
Pvir07NG0026180.1 Alkaloid H6H medium borderline
Pvir07NG0026180.2 Alkaloid H6H medium borderline
Pvir07NG0026180.3 Alkaloid H6H medium borderline
Pvir07NG0031440.1 Alkaloid H6H low borderline
Pvir07NG0031450.1 Alkaloid H6H low borderline
Pvir07NG0033030.1 Alkaloid H6H high pass
Pvir08NG0005600.1 Alkaloid H6H low borderline
Pvir09KG0000530.1 Alkaloid H6H medium pass