Panicum virgatum (panicum_virgatum)
Imported from atlas release summary for Panicum virgatum.
5617
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5617
Candidate Genes
BAHD
5.77%
C3'H/CYP98A
5.35%
C4H
5.27%
POD
4.83%
4CL
3.98%
UGT
3.69%
7DLGT
3.58%
UFGT
3.51%
Other Families
64.02%
More Families (98)
IFS
409
3.2%
T3O
408
3.19%
NMT
395
3.09%
CYP76
350
2.74%
DWF4/CYP90B1
295
2.31%
F3'H/CYP75B
264
2.07%
STR
260
2.03%
F3H
256
2.0%
CAS
227
1.78%
CYP71
224
1.75%
CAD
221
1.73%
SMT1/SMT2/SMT3
206
1.61%
BR6OX2/CYP85A2
204
1.6%
TPS
197
1.54%
GES
184
1.44%
SGD
167
1.31%
IFR
149
1.17%
CSE
149
1.17%
PMT
143
1.12%
PYKS
139
1.09%
LAC
133
1.04%
HCT
133
1.04%
SLS
130
1.02%
H6H
130
1.02%
ANR
124
0.97%
RAS
124
0.97%
TRI/TRII
121
0.95%
CCR
118
0.92%
PAL
117
0.92%
CODM/T6ODM
104
0.81%
COMT
98
0.77%
GS
87
0.68%
NCS
86
0.67%
CYP90D1
81
0.63%
16OMT
78
0.61%
CNMT
76
0.59%
CHS
71
0.56%
CPD/CYP90A1
71
0.56%
G8O/G8H
69
0.54%
T16H
69
0.54%
COR
66
0.52%
IO
57
0.45%
TAT
57
0.45%
FNS
54
0.42%
BR6OX1/CYP85A1
54
0.42%
F3'5'H/CYP75A
53
0.41%
BBE
52
0.41%
CYP51G1
52
0.41%
8HGO
51
0.4%
DFR
51
0.4%
SQS/FDFT1
44
0.34%
F5H/CYP84A
42
0.33%
FPPS
40
0.31%
LAMT
39
0.31%
SMO1/SMO2
39
0.31%
DWF1
37
0.29%
MPO
31
0.24%
CPR
31
0.24%
7DLH
29
0.23%
GGPPS
27
0.21%
ANS/LDOX
25
0.2%
CCoAOMT
25
0.2%
MVD
25
0.2%
HPPR
23
0.18%
AACT
21
0.16%
DXS
21
0.16%
TYDC_DDC
20
0.16%
HMGS
20
0.16%
MVK
15
0.12%
MCT/IspD
13
0.1%
CYP719
12
0.09%
ISY
12
0.09%
ROT3/CYP90C1
12
0.09%
DET2
12
0.09%
CYP80B1
11
0.09%
CHI
11
0.09%
HMGR
11
0.09%
CYP80F1
10
0.08%
XMT_MXMT_DXMT
10
0.08%
6OMT_4OMT_SOMT
8
0.06%
TDC
8
0.06%
FLS
8
0.06%
IDI
8
0.06%
ODC
7
0.05%
ADC
7
0.05%
HDS/IspG
7
0.05%
DXR
6
0.05%
FK
5
0.04%
HYD1
5
0.04%
CMK/IspE
5
0.04%
DWF5
4
0.03%
SQE
4
0.03%
MDS/IspF
4
0.03%
PMK
4
0.03%
GPPS
3
0.02%
CPI1
2
0.02%
DWF7
2
0.02%
HDR/IspH
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1471 | 20 | BAHD (546) | View species results |
| Alkaloid pathway | 1354 | 25 | 7DLGT (243) | View species results |
| Phenylpropanoid pathway | 1185 | 11 | POD (599) | View species results |
| Flavonoid pathway | 712 | 13 | UFGT (422) | View species results |
| Rosmarinic acid pathway | 466 | 7 | C4H (205) | View species results |
| Steroid pathway | 429 | 12 | CAS (177) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4263 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 994 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pvir04KG0022930.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04KG0022930.8 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04KG0022930.9 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04KG0025430.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04KG0025630.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04KG0027270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04KG0028660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04KG0028690.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04KG0032290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04NG0009290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04NG0016930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04NG0017310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04NG0018870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04NG0022420.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04NG0023990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir04NG0025030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04NG0025080.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir04NG0025360.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir05KG0003900.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir05KG0004910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0009540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027720.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027720.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027720.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027750.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027780.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027790.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027790.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0027790.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0028310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0034590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0036210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0036210.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0036210.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0044500.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05KG0047310.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir05NG0005100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0005100.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0005100.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0005100.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0009460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0026460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0026500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0026500.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0026500.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |