PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Pvir08KG0020550.1 Alkaloid PYKS high pass
Pvir08KG0024190.1 Alkaloid PYKS low borderline
Pvir08KG0024190.2 Alkaloid PYKS low borderline
Pvir08KG0024210.1 Alkaloid PYKS low borderline
Pvir08NG0016980.1 Alkaloid PYKS high pass
Pvir08NG0016990.1 Alkaloid PYKS high pass
Pvir08NG0017010.1 Alkaloid PYKS high pass
Pvir08NG0017020.1 Alkaloid PYKS high pass
Pvir08NG0017030.1 Alkaloid PYKS high pass
Pvir08NG0017040.1 Alkaloid PYKS high pass
Pvir08NG0020040.1 Alkaloid PYKS high pass
Pvir08NG0020290.1 Alkaloid PYKS low borderline
Pvir08NG0020300.1 Alkaloid PYKS low borderline
Pvir08NG0020610.1 Alkaloid PYKS low borderline
Pvir08NG0021810.1 Alkaloid PYKS high pass
Pvir09KG0022740.1 Alkaloid PYKS medium pass
Pvir09KG0023730.1 Alkaloid PYKS low borderline
Pvir09KG0023730.2 Alkaloid PYKS low borderline
Pvir09KG0027100.1 Alkaloid PYKS low borderline
Pvir09KG0031160.1 Alkaloid PYKS low borderline
Pvir09KG0041950.1 Alkaloid PYKS low borderline
Pvir09KG0041960.1 Alkaloid PYKS low borderline
Pvir09KG0051550.1 Alkaloid PYKS low borderline
Pvir09KG0053400.1 Alkaloid PYKS low borderline
Pvir09KG0056680.1 Alkaloid PYKS low borderline
Pvir09KG0058050.1 Alkaloid PYKS low borderline
Pvir09NG0022580.1 Alkaloid PYKS medium pass
Pvir09NG0022580.2 Alkaloid PYKS medium pass
Pvir09NG0023490.1 Alkaloid PYKS low borderline
Pvir09NG0026800.1 Alkaloid PYKS low borderline
Pvir09NG0030390.1 Alkaloid PYKS low borderline
Pvir09NG0041230.1 Alkaloid PYKS low borderline
Pvir09NG0041250.1 Alkaloid PYKS low borderline
Pvir09NG0041250.2 Alkaloid PYKS low borderline
Pvir09NG0051160.1 Alkaloid PYKS low borderline
Pvir09NG0052900.1 Alkaloid PYKS low borderline
Pvir09NG0056140.1 Alkaloid PYKS low borderline
Pvir09NG0056140.2 Alkaloid PYKS low borderline
Pvir09NG0056140.3 Alkaloid PYKS low borderline
Pvir09NG0056140.4 Alkaloid PYKS low borderline
Pvir09NG0057860.1 Alkaloid PYKS low borderline
Pvir02KG0031830.1 Alkaloid SGD medium pass
Pvir02KG0031830.2 Alkaloid SGD medium pass
Pvir02KG0031840.1 Alkaloid SGD medium pass
Pvir02KG0031850.1 Alkaloid SGD medium pass
Pvir02KG0033520.1 Alkaloid SGD medium pass
Pvir02KG0033530.1 Alkaloid SGD medium pass
Pvir02KG0036470.1 Alkaloid SGD medium pass
Pvir02KG0036480.1 Alkaloid SGD medium pass
Pvir02KG0036500.1 Alkaloid SGD medium pass