Panicum virgatum (panicum_virgatum)
Imported from atlas release summary for Panicum virgatum.
6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
12778
Family-Level Calls
BAHD
5.77%
C3'H/CYP98A
5.35%
C4H
5.27%
POD
4.83%
4CL
3.98%
UGT
3.69%
7DLGT
3.58%
UFGT
3.51%
Other Families
64.02%
More Families (98)
IFS
409
3.2%
T3O
408
3.19%
NMT
395
3.09%
CYP76
350
2.74%
DWF4/CYP90B1
295
2.31%
F3'H/CYP75B
264
2.07%
STR
260
2.03%
F3H
256
2.0%
CAS
227
1.78%
CYP71
224
1.75%
CAD
221
1.73%
SMT1/SMT2/SMT3
206
1.61%
BR6OX2/CYP85A2
204
1.6%
TPS
197
1.54%
GES
184
1.44%
SGD
167
1.31%
IFR
149
1.17%
CSE
149
1.17%
PMT
143
1.12%
PYKS
139
1.09%
LAC
133
1.04%
HCT
133
1.04%
SLS
130
1.02%
H6H
130
1.02%
ANR
124
0.97%
RAS
124
0.97%
TRI/TRII
121
0.95%
CCR
118
0.92%
PAL
117
0.92%
CODM/T6ODM
104
0.81%
COMT
98
0.77%
GS
87
0.68%
NCS
86
0.67%
CYP90D1
81
0.63%
16OMT
78
0.61%
CNMT
76
0.59%
CHS
71
0.56%
CPD/CYP90A1
71
0.56%
G8O/G8H
69
0.54%
T16H
69
0.54%
COR
66
0.52%
IO
57
0.45%
TAT
57
0.45%
FNS
54
0.42%
BR6OX1/CYP85A1
54
0.42%
F3'5'H/CYP75A
53
0.41%
BBE
52
0.41%
CYP51G1
52
0.41%
8HGO
51
0.4%
DFR
51
0.4%
SQS/FDFT1
44
0.34%
F5H/CYP84A
42
0.33%
FPPS
40
0.31%
LAMT
39
0.31%
SMO1/SMO2
39
0.31%
DWF1
37
0.29%
MPO
31
0.24%
CPR
31
0.24%
7DLH
29
0.23%
GGPPS
27
0.21%
ANS/LDOX
25
0.2%
CCoAOMT
25
0.2%
MVD
25
0.2%
HPPR
23
0.18%
AACT
21
0.16%
DXS
21
0.16%
TYDC_DDC
20
0.16%
HMGS
20
0.16%
MVK
15
0.12%
MCT/IspD
13
0.1%
CYP719
12
0.09%
ISY
12
0.09%
ROT3/CYP90C1
12
0.09%
DET2
12
0.09%
CYP80B1
11
0.09%
CHI
11
0.09%
HMGR
11
0.09%
CYP80F1
10
0.08%
XMT_MXMT_DXMT
10
0.08%
6OMT_4OMT_SOMT
8
0.06%
TDC
8
0.06%
FLS
8
0.06%
IDI
8
0.06%
ODC
7
0.05%
ADC
7
0.05%
HDS/IspG
7
0.05%
DXR
6
0.05%
FK
5
0.04%
HYD1
5
0.04%
CMK/IspE
5
0.04%
DWF5
4
0.03%
SQE
4
0.03%
MDS/IspF
4
0.03%
PMK
4
0.03%
GPPS
3
0.02%
CPI1
2
0.02%
DWF7
2
0.02%
HDR/IspH
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1471 | 20 | BAHD (546) | View species results |
| Alkaloid pathway | 1354 | 25 | 7DLGT (243) | View species results |
| Phenylpropanoid pathway | 1185 | 11 | POD (599) | View species results |
| Flavonoid pathway | 712 | 13 | UFGT (422) | View species results |
| Rosmarinic acid pathway | 466 | 7 | C4H (205) | View species results |
| Steroid pathway | 429 | 12 | CAS (177) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4263 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 994 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pvir05NG0027140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0028480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0033450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0035110.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0043730.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir05NG0046550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir05NG0048900.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir06KG0006150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06KG0013270.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06KG0030270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06NG0003940.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir06NG0006520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06NG0009740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir06NG0012750.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06NG0012750.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06NG0029080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir06NG0029080.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0003320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0005000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0005000.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0005670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0008130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0008130.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0008130.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0008130.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0008130.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0023710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0023710.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0023710.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07KG0037480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07NG0005790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07NG0006300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07NG0022040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07NG0022040.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir07NG0035980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir08KG0000010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir08KG0003000.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir08KG0003010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir08KG0007580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir08NG0001910.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir08NG0004960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir09KG0008670.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir09KG0016120.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pvir09KG0019610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pvir09KG0021800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |