PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Pvir03NG0001840.1 Alkaloid T3O medium pass
Pvir03NG0001840.2 Alkaloid T3O medium pass
Pvir03NG0013460.1 Alkaloid T3O medium pass
Pvir03NG0023080.1 Alkaloid T3O medium borderline
Pvir03NG0024190.1 Alkaloid T3O medium pass
Pvir03NG0026130.1 Alkaloid T3O low borderline
Pvir03NG0034900.1 Alkaloid T3O medium borderline
Pvir03NG0035010.1 Alkaloid T3O medium borderline
Pvir03NG0042970.1 Alkaloid T3O medium borderline
Pvir03NG0045860.1 Alkaloid T3O medium borderline
Pvir03NG0048130.1 Alkaloid T3O medium borderline
Pvir04KG0021490.1 Alkaloid T3O low borderline
Pvir04KG0023930.1 Alkaloid T3O medium borderline
Pvir04KG0023930.2 Alkaloid T3O medium borderline
Pvir04KG0026560.1 Alkaloid T3O medium borderline
Pvir04KG0028070.1 Alkaloid T3O medium borderline
Pvir04KG0028100.1 Alkaloid T3O medium borderline
Pvir04KG0028500.1 Alkaloid T3O high pass
Pvir04KG0032660.1 Alkaloid T3O medium pass
Pvir04NG0018420.1 Alkaloid T3O medium pass
Pvir04NG0019320.1 Alkaloid T3O medium pass
Pvir04NG0019320.2 Alkaloid T3O medium pass
Pvir04NG0024630.1 Alkaloid T3O medium borderline
Pvir04NG0024660.1 Alkaloid T3O medium borderline
Pvir05KG0001010.1 Alkaloid T3O medium borderline
Pvir05KG0001020.1 Alkaloid T3O medium borderline
Pvir05KG0001040.1 Alkaloid T3O medium borderline
Pvir05KG0002330.1 Alkaloid T3O low borderline
Pvir05KG0003430.1 Alkaloid T3O medium pass
Pvir05KG0004360.1 Alkaloid T3O low borderline
Pvir05KG0004370.1 Alkaloid T3O medium pass
Pvir05KG0004530.1 Alkaloid T3O medium borderline
Pvir05KG0027420.1 Alkaloid T3O low borderline
Pvir05KG0034250.1 Alkaloid T3O medium borderline
Pvir05KG0034300.1 Alkaloid T3O medium borderline
Pvir05KG0034320.1 Alkaloid T3O medium borderline
Pvir05KG0042030.1 Alkaloid T3O medium borderline
Pvir05KG0042070.1 Alkaloid T3O medium pass
Pvir05KG0042080.1 Alkaloid T3O medium pass
Pvir05KG0045920.1 Alkaloid T3O low borderline
Pvir05KG0045960.1 Alkaloid T3O medium borderline
Pvir05KG0046150.1 Alkaloid T3O medium pass
Pvir05KG0052930.1 Alkaloid T3O low borderline
Pvir05NG0001030.1 Alkaloid T3O medium borderline
Pvir05NG0001080.1 Alkaloid T3O medium borderline
Pvir05NG0001090.1 Alkaloid T3O medium borderline
Pvir05NG0001100.1 Alkaloid T3O medium borderline
Pvir05NG0002410.1 Alkaloid T3O low borderline
Pvir05NG0003370.2 Alkaloid T3O medium pass
Pvir05NG0004420.1 Alkaloid T3O medium pass