Plagiochila semidecurrens (plagiochila_semidecurrens)
Imported from atlas release summary for Plagiochila semidecurrens.
683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
683
Candidate Genes
C4H
6.37%
BAHD
5.86%
C3'H/CYP98A
5.19%
POD
5.03%
CYP76
4.97%
4CL
4.86%
NMT
3.41%
IFS
3.02%
Other Families
61.31%
More Families (93)
UGT
53
2.96%
STR
52
2.9%
7DLGT
48
2.68%
UFGT
47
2.62%
DWF4/CYP90B1
40
2.23%
BR6OX2/CYP85A2
39
2.18%
IFR
37
2.07%
T3O
36
2.01%
F3H
34
1.9%
F3'H/CYP75B
31
1.73%
TRI/TRII
30
1.68%
GS
30
1.68%
PAL
27
1.51%
H6H
25
1.4%
G8O/G8H
23
1.28%
HCT
22
1.23%
COMT
22
1.23%
CAD
21
1.17%
SMT1/SMT2/SMT3
21
1.17%
LAMT
19
1.06%
IO
19
1.06%
RAS
17
0.95%
ANR
15
0.84%
CSE
15
0.84%
8HGO
14
0.78%
CNMT
14
0.78%
T16H
14
0.78%
LAC
14
0.78%
SGD
13
0.73%
FNS
13
0.73%
COR
11
0.61%
F3'5'H/CYP75A
11
0.61%
PYKS
10
0.56%
CYP80B1
10
0.56%
CCR
10
0.56%
CPD/CYP90A1
10
0.56%
PMT
9
0.5%
CAS
9
0.5%
BR6OX1/CYP85A1
9
0.5%
AACT
9
0.5%
CYP719
8
0.45%
16OMT
8
0.45%
NCS
7
0.39%
CODM/T6ODM
7
0.39%
CCoAOMT
7
0.39%
F5H/CYP84A
7
0.39%
TPS
7
0.39%
SLS
6
0.34%
TAT
6
0.34%
CYP71
6
0.34%
MVK
6
0.34%
BBE
5
0.28%
CHS
5
0.28%
CPR
5
0.28%
DWF5
5
0.28%
ISY
4
0.22%
CYP80F1
4
0.22%
MPO
4
0.22%
DFR
4
0.22%
HPPR
4
0.22%
CYP90D1
4
0.22%
PMK
4
0.22%
DXS
4
0.22%
CMK/IspE
4
0.22%
MCT/IspD
4
0.22%
TDC
3
0.17%
XMT_MXMT_DXMT
3
0.17%
ADC
3
0.17%
7DLH
3
0.17%
CHI
3
0.17%
ANS/LDOX
3
0.17%
DWF7
3
0.17%
SMO1/SMO2
3
0.17%
DET2
3
0.17%
SQS/FDFT1
3
0.17%
HMGR
3
0.17%
HDS/IspG
3
0.17%
GGPPS
3
0.17%
SQE
2
0.11%
ROT3/CYP90C1
2
0.11%
FK
2
0.11%
DWF1
2
0.11%
MVD
2
0.11%
MDS/IspF
2
0.11%
GES
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
CYP51G1
1
0.06%
FPPS
1
0.06%
IDI
1
0.06%
DXR
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 188 | 12 | POD (84) | View species results |
| Terpenoid pathway | 169 | 17 | BAHD (62) | View species results |
| Alkaloid pathway | 132 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 85 | 10 | UFGT (42) | View species results |
| Rosmarinic acid pathway | 72 | 7 | C4H (35) | View species results |
| Steroid pathway | 37 | 13 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 633 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 144 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Psem1680009700 | Alkaloid | 16OMT | medium | borderline |
| Psem3950640086050 | Alkaloid | 16OMT | medium | borderline |
| Psem4112390116670 | Alkaloid | 16OMT | medium | borderline |
| Psem4399950193180 | Alkaloid | 16OMT | low | borderline |
| Psem4447460245310 | Alkaloid | 16OMT | low | borderline |
| Psem4455480256870 | Alkaloid | 16OMT | medium | borderline |
| Psem4689030287130 | Alkaloid | 16OMT | medium | borderline |
| Psem4689050287200 | Alkaloid | 16OMT | medium | borderline |
| Psem4458320260420 | Alkaloid | 6OMT_4OMT_SOMT | low | borderline |
| Psem10690002760 | Alkaloid | 7DLGT | low | borderline |
| Psem2880020018490 | Alkaloid | 7DLGT | medium | pass |
| Psem2910023840 | Alkaloid | 7DLGT | low | borderline |
| Psem4165680120590 | Alkaloid | 7DLGT | medium | pass |
| Psem4237970129710 | Alkaloid | 7DLGT | low | borderline |
| Psem4240110130230 | Alkaloid | 7DLGT | low | borderline |
| Psem4275840137180 | Alkaloid | 7DLGT | low | borderline |
| Psem4286540139440 | Alkaloid | 7DLGT | low | borderline |
| Psem4324540150440 | Alkaloid | 7DLGT | medium | pass |
| Psem4346660159700 | Alkaloid | 7DLGT | low | borderline |
| Psem4354120163640 | Alkaloid | 7DLGT | high | pass |
| Psem4355400164340 | Alkaloid | 7DLGT | low | borderline |
| Psem4355400164350 | Alkaloid | 7DLGT | low | borderline |
| Psem4361150167370 | Alkaloid | 7DLGT | low | borderline |
| Psem4361970167730 | Alkaloid | 7DLGT | medium | pass |
| Psem4362010167740 | Alkaloid | 7DLGT | low | borderline |
| Psem4365000169230 | Alkaloid | 7DLGT | low | borderline |
| Psem4367170169980 | Alkaloid | 7DLGT | low | borderline |
| Psem4379950178260 | Alkaloid | 7DLGT | low | borderline |
| Psem4380030178330 | Alkaloid | 7DLGT | low | borderline |
| Psem4384310180680 | Alkaloid | 7DLGT | medium | pass |
| Psem4386090182130 | Alkaloid | 7DLGT | low | borderline |
| Psem4391860185990 | Alkaloid | 7DLGT | medium | pass |
| Psem4401890194530 | Alkaloid | 7DLGT | low | borderline |
| Psem4407130199360 | Alkaloid | 7DLGT | low | borderline |
| Psem4408890200910 | Alkaloid | 7DLGT | low | borderline |
| Psem4413820206090 | Alkaloid | 7DLGT | low | borderline |
| Psem4413850206180 | Alkaloid | 7DLGT | low | borderline |
| Psem4418860211120 | Alkaloid | 7DLGT | medium | pass |
| Psem4419010211280 | Alkaloid | 7DLGT | low | borderline |
| Psem4439660234360 | Alkaloid | 7DLGT | low | borderline |
| Psem4441920237560 | Alkaloid | 7DLGT | medium | pass |
| Psem4446220243670 | Alkaloid | 7DLGT | low | borderline |
| Psem4447250244960 | Alkaloid | 7DLGT | low | borderline |
| Psem4449630248780 | Alkaloid | 7DLGT | low | borderline |
| Psem4453360254170 | Alkaloid | 7DLGT | medium | pass |
| Psem4461450265120 | Alkaloid | 7DLGT | low | borderline |
| Psem4463100267640 | Alkaloid | 7DLGT | low | borderline |
| Psem4469070274950 | Alkaloid | 7DLGT | medium | pass |
| Psem4511680277140 | Alkaloid | 7DLGT | medium | pass |
| Psem4511700277160 | Alkaloid | 7DLGT | medium | pass |